Scaffold Ga0272425_1000932

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000932
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59090
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (22.03%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F008115	Metagenome	338	Y
F019260	Metagenome	230	Y
F021896	Metagenome	216	Y
F023763	Metagenome	208	Y
F061399	Metagenome	131	Y
F080690	Metagenome	114	Y
F104132	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100093231	F080690	N/A	MKSFHNLLIDDERAVKQFTQSVIENSVEIFRAMQELQNQVXQHDVITSFLFIIFSSSVYIELNSQSLMMIAQIITQILNNQSLLVVHLSANYVAAFIAFRFKKLLDISEYEKDKDXLNAXKQSLIQRMNVNDDHYFFHRVKIIYVESXLIIDKKIHNLMNQYXVNDFCIIFIFADXXHKLHHYCNNSFKTEDAHLYLHETLKQDMNNFVDYYNLFYQKKECFLMKDFSLIDCLKCNVNYFIQVIVFFXXNLDETQSFIFHQ
Ga0272425_100093232	F001951	N/A	MMKLRFIDSLRNEKEKDEDTVKITITKIMIFELKELLINVEMFLTLMNETMMKMKQD
Ga0272425_100093239	F021896	N/A	MKNNLESEDFLKNVECNLTFLKLDKEYIFSDEMSEQSNYFTIVINESSIEVHEI
Ga0272425_100093240	F023763	N/A	MSFQNCLMLILMSRIECISLFKKIFXATCQSIQLIINLIKMISDAIVEFRQKLTLMSLMTTQLLNXHEILKIFVIHDHFNRINKVFKLXSSFLESANNDHEFFIIDLIVTLDXVMLLQKVSDXMKNFILIVLRENVFXTHSSKHXFLSQSCDLNYNDEE
Ga0272425_100093242	F061399	N/A	MKVEEVINCFYAHVXKHHDLLEFFMFDXNTQFIFNVXKHMCKMLKIDIKLSTTYHSEINDQIKRVNAVMKHYLXVFVNYMQNNXVKXLSEVEFVINNTLSLITLASFFLINSSQNSHLNFKSSESLLENFTFQAXDKLINVKEFIKKMKKLTEHLHNEMLIAQIIYEFNVNFSCRSCSKYFIEDEVXLNACNLNIVCFVVKLNDHNIDFFKIKRVFENNSLIIELNLSAFMKIHSIFHVTLLSYITSDFLSNQHQKS
Ga0272425_100093249	F019260	N/A	MIQELKSISRINIKSEKYLNSELYIKEQENKLNQFIFKLISKLKLNVNHYSTFKSHLLYEYSRLLRNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSNKQEIAQQFISALRMQNHIFIEYLFNFQQHIDAIEYDVVTQKFNLKNELFSELKALLIQVNVSSLNYEQLIIKCQQLNSXYHITVQNLFKSKAVIHSVSVTSTVLAYLVKYATLSTGLKATISSSRDLMNLSIINMKKXDSLTLKKHQHRMINHLCLYCDKFEHQTAICNSKLKIQLQIVSLFVFAIFIDNFAFDTSLVLRKV
Ga0272425_100093255	F104132	AGAAG	MNEILNFRVKNSQLEYLIKXTEIKENSXVKFANVMNVIEVMNVYHARNLDCSSKNSXIAYVQKSSDSEYESEN
Ga0272425_100093258	F008115	N/A	MNFITELSLSENYNVICMIICRLFKKHHYVFCHXEDDDISIEETVXIMLXNVYQLHDLLSSIVLNRDSQFILIMXQSFCKXLKIKVNLSTVYHSEINNQSKXVNQDVERELXIYCNYMQNDXAKXLSMMKFSDNFNMFSTISMISFYFNKDFHSRMSFDSDTTDYEMTHQRIEARKIDDIVTXMSELLIFNHQQLKKIKQITEAQMNKHRRDIIYEVDDQVXLVFENIKITRSCKNLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSMFSLKCLXPSSNDFLLRQHSESSRSLIIEENEEHXEVNDILNFRRYRERLQYKVKXIEIDHDDEXYYVDKEKFNDLKKVLNEFHKLYLNKLH