Scaffold Ga0272425_1000921

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000921
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59524
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (26.15%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F007840	Metagenome	343	Y
F008169	Metagenome	337	Y
F021452	Metagenome	218	Y
F037509	Metagenome	167	Y
F061402	Metagenome	131	Y
F078020	Metagenome	116	Y
F086376	Metagenome	110	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100092112	F086376	N/A	MTRSSESASITHYDFQNARKESLLSQNXTASEEDMNASSDTEEKNMNILFFDHKMIKISISIELNAXISTHEADDIIVFIKYMYQQHDIKIKTHNDMIQMLKDVNEINITLKITQMHLQKENKNKNMIIHHLKVASSX
Ga0272425_100092115	F021452	N/A	MFDDSFNFKSFTVDVILSSLEKIFRFFALINTEVIDMTFIDESLMSELCERFDIQSISLLKSKSIQSYDEISDQKSITHALYTLIMIQEHKNEMMFLLITHLEQHKIIFENLXLKRNQILINLANN
Ga0272425_100092120	F096307	N/A	MLYIVVTQINASLKEDVLKHKKDVGSKDVCDTKKCVCHRNLLTTHNTKKCVYLEDNRSXLEDARKEKRCXVISESDLSQI
Ga0272425_100092128	F037509	N/A	MILIFILIQINSTDNKMSIKKFVYLIINDIERQNNIKKSIESTRTYDHVISREFIAQSVASVQIN
Ga0272425_100092135	F061402	N/A	MQDDXFIXLFMIEFIDNNAISSSIKQSTFFLNKNFHSHMSFNLNSIEYEITQARIEADKAKNIFEHMK
Ga0272425_100092142	F008169	N/A	MSSRSLTEERFEEFRNRFSQTSDADSSKPRTKSPSAASFIHEDDESFAETIILLVFYETXKARSLALDEETDRLYELGKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXENXYGKIQNKLEINVDLFPNERVKLSYIHSRLFDDAAEITQARRERGCVNLYKIVDDLLKELAQLFNDSNKKVNFRRKYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLRFIXVGQLVQPDSLKEIRSYLIRLNNDQRVIREIKNKIKRVDDLSKTIFHRATVVTQSVDHSKPDQLKSRDAILTSVKEADILVESCFICHKSGHSSKECFDRPTRINAVNNEYDRFGFDSDSDSKN
Ga0272425_100092155	F078020	N/A	MRFFFDRLISAXKDAALTLNIEKFFFEAVEADRXSTLKAELIEEFDDRDHFECEALTDIEKTEMKASNXFEKTMTSFCISSSISFLFIQSFLNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFLVSFSSYSLINFSLASRMSXISSFXHIXSTSFVXIKM
Ga0272425_100092157	F007840	N/A	MIDAIERQNNTRESIESTARLVELLDDLQLIKYASFTSINRISDKESSLIARESNQSRESINSQIKQQKRLHLLLSSIALRSISFF
Ga0272425_100092163	F005901	N/A	MSRLEDDAAKHIFAXRCFDSSNSFTLIYKLFDHLKEVYDELNKNQKSQREYNALRQADKSFNIFYFNFMKLFNYLNYDDCILMNDLQNKINNHLQNILSICSKNFTSLSHLKKFLQDVNNKQRVNYQLRSERCTVIIKVTVISDKCATSLSVMTSIINYVKSIIFSIFKSTRSFIICYICKILSHLSKNCSQNKINTFTSQAFIFHLHEIVISKNKENEKISSSSKNSETKN