Scaffold Ga0272425_1000914

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000914
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59744
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (8.93%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F008169	Metagenome	337	Y
F019260	Metagenome	230	Y
F048018	Metagenome	148	Y
F074202	Metagenome	119	Y
F081945	Metagenome	113	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100091413	F008169	N/A	VKISCSTXLRELTIKNLRELLENHSKNSQTKNTLLINNILLXRLNTXSYVFINTVEHHHSLDLVLSSNFIMSKRSSIKKCFEKFRSCFSQISETDSLKFFSAESFINEDNKSFAETVILFVSIENXKTXCMILDKETDQLNELNKQRDDEIKELKTRLQTKEITSFNFIYSERSKSQKIPDSFXFTDEKNFTWKNXYGKIQNKLEINVNLFSNERVKLSYVHFRLFNDAADVTQSKRERNCVNLYKIIDDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIVDLKDKINSRLRFIXIDQLIQPDFLKEIHFYLIHLNNNQXVIREIKNKVNLIKHINDLSKIIFHKAVVTQSVNHSKSDHLKLHDVILTNVKEADVLVETCFIYHKSDHSSKECFDRSIRINAMNNEYDHFKFDFNSNFDSKN
Ga0272425_100091416	F081945	N/A	MPSRSLTEERFEEFQNRFFQTSDADSSKSRTKSSSAASFIHEDDESFAEMIILLVFYET
Ga0272425_100091418	F004755	N/A	LKELAQLFDDSNKKVNFRREYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLRFIXVDQLVQPDFLKEIRFYLIYLNNDQRVIXEIKNKIKRVDDLSKTIFHRATVVTQSVDHSKSDQLKSRDAVLTSVKEADILVESCFICHKSGHSSKECLDRPTRINAVNNEYDCFDFDSNFDSKN
Ga0272425_100091425	F019260	N/A	MTHSKSISNNIEEXENKLNQFIFKLISKLKLNANHYSIFESRLLYEYSRLSKNAVAQALSRMTVQHDKLVTIEQLVVLLRQVFDDSDKQEIAQQFISALRMQNHIFIEYLFNFQQHIDAIEYDVVTRKFNLKNELFSELKALLIQMNVSNLNYEQLIIKCQQLNSQYHVTVQNLFKSKAVIHSIFIIFTVFAYLVKYATLSTNSKATILSSRNLMNLSIINMKKXDSLILEKHQHRMINHLCLYCNKSEHQTAICNSKLKIQLQVISLFIFAISINNLAFNTSLALKKV
Ga0272425_10009143	F094624	N/A	MCKMLKINVKLSTMYHSEINDQIEKINVVMKHYLQVFINYMQNDXVKXLSEVKFVVNNASSLITLTSFFLINLSQNSCLDFKSSEFLFKNLMFQAXDKLINVKKFIKKMKKLTEHLHDEMLIAQIIYEFNVNLSCCSCSRYFVKDEVXLNACNLSIAHLTVKLNDHNVDFFKIKRVFKNNSLIIELNLSTFMKIHSIFHVILLNHIASDFLSNQRQKS
Ga0272425_10009144	F048018	N/A	MTLLXASXMIXRHSLSELSTYFLSXKYRXFSCSSHSTKEILLXYHALLQSTSIIXAANLSLILTYFHNVXVRMSAESSSRFRVSXFSXDSMFSTLNSSISRFIRIKICKNAEITENKCNXTEFKMMICDXN
Ga0272425_100091449	F074202	N/A	MILXNFKMCVYEXSLFTCXKEIYMYVEKCLRLFYCXLRSQSLFLTKLLEKCASNFMKTVDCKMNCKTIYMSFLLMSSCLLCSDNAFNLALFLNDDFFLKLVISKLRLRVETELNFKEEVILRCSFFTAKDDNLDSLFNLKTATNFIKFHXFIIFYNDXLFFFNLFLSIKCDVTXSKXADAENXAFKSEVVVNLAVINLAVLNNVNNKSSLKFENLDYENDMKRLTSIVSSFFSSDIVN