Scaffold Ga0272425_1000871

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000871
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62011
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (15.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F038010	Metagenome	166	N
F040408	Metagenome	161	Y
F048019	Metagenome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100087114	F040408	N/A	MYNYKSIFDIYIKNDAMKEEVLTAKECIEMLQDVQNTLMQ
Ga0272425_100087120	F048019	N/A	MIARTXCFDMNDHAFKLFIAEDFVKALQDKFIMYAFIMINVIKESIIEHQVKVMNNMMSRITNAFETQTLLVKLKEYEDVFLIESVDKLFLHEDYDHAIEITAKSSYELLYNLLNT
Ga0272425_100087123	F038010	N/A	MNNDHLVFSDNLESNKINVNLSVLIDINVIDYAFIDDSFAQRHSLLCFSLSEICTLQKFNNQSVIFNSITHYALVKLQVLSEKLEEILFYVTQLSQFSVVLDLL
Ga0272425_100087151	F036035	N/A	MKNDATXRKHHELEKASRNHERDNSDHSNDILDKHTELISDCDVIKKSNERERK
Ga0272425_100087152	F038008	N/A	MKMNQSHLYTVTFXSKSLKIIIVANKKMSIKQHNLDIIASKQKVYLNNSNSRDDVTVIMMRMNXKLNKRLKKLTLIITHHDELKELVAKTKHFTDVVIMNQECHEKIYKVYSDNQTSLKTVKVMISTKDQTCLQRVQTAHESI
Ga0272425_10008718	F005901	N/A	LHSYISIYKLLKHLEEIYENQNKNQKCCCKYNVLRQADKFFNVFYFNFMKLFSYLDYDDCTLINDLQNKINNCLQNALSVCSEDFASLHRFKSFLQEVNNKQRANYQLRSEQRTVIVKIIVVSDKRATFLSAVMTLIIKYVKSTIFSIFELVRSSIVCYICKTSDHLFKNCSQNKINISTFCAFTLHLHEIVILKNKKNEKMSFSSSENSEAKN