Scaffold Ga0272425_1000866

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000866
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62140
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (18.18%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F028667	Metagenome	190	Y
F032102	Metagenome	180	Y
F032884	Metagenome	178	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F055318	Metagenome	138	Y
F057011	Metagenome	136	Y
F064254	Metagenome	128	Y
F100079	Metagenome	102	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100086616	F032884	N/A	MIIRNEXVEREECEETKKNESTMTRIERERLYVQTIDVIDQRKDIKQRLWSDYM
Ga0272425_10008662	F028667	N/A	MTRDSELVESRTACLLRSIASRRVSLISFDASAKSQNVAISXDINTSQQLRQXAIDQSDEIIKMLIELRDQRDMTLKLNEQXINVQVNHIKRLDELEINQTTIDTQEETIVELQEKVLSLKKKQRSANQSXSRQSTESRVSTKPLPRQSIENHTRRELFTLFDNDHHKSFKFSNSSVFINKDESTXNSXRIKIDDKLQANVDHFVDETICIVYVISRLEGDAAEHIFAXRRHDALHSYISIYELLKHLEEIYENQNKNRKCRCKYNVLRQADKLFNVFYFDFMKLFSYLDYDDRILMNDLQNKINNRLQNALSVCFEDFTSLHRLKSFLQEVNNKQRVNYQLRSQLRTVIAKVTVVPDKRAATSLPAVMTSIIEYVKSTIFSTSESVRSSIVCYICKISDHLFKNCSQNKIDISTSCAFTFRLHEIIISKNKKNEEMSSSEDSEAKN
Ga0272425_100086620	F036035	N/A	MKDRMKDDAMQREHHELEKASRNHERDDSNHLNDTLNKHTKSISDCDIIKESDKREKK
Ga0272425_100086622	F102180	GAG	LTLIITHHDELKELVARMKHLADVVTVNQECHEKIYKVYNDSQTSLKTVKVMISTKDQTRLQ
Ga0272425_100086624	F032884	GAG	MTIRNGRVEREECERTKKNESTMTRVERERLYAQTIDVIDQREDIKQRLXPGYM
Ga0272425_100086626	F000597	N/A	MKDVLISSMMSMLNDFLTSESLTIECVLSNNKISYSLKLLIDIKAADYSFINEVITQIVYDQLQIKFLTLIKAKLIQEFNDYYAKKLITYVIYLNLMIQNHTVNIAFMLITQLKQHQMILEKIXMNKINLVINM
Ga0272425_100086632	F032102	N/A	MKIADLEKNNDQSIYRQVLDANEIDENCTLLRKAIARDEAQYEGIKLKNCXTQNEILFHDSQL
Ga0272425_100086635	F028667	N/A	MTRDSELVESQTAHLLRSTASRRVSLISFDASVNVKNADTLXNIKTEEQLRQXAHDQSNEIIKMLNELRSQXDMTLKLNEQXIVVQVEHDKRLNQLEIKQMIIDTLKETNKCYQKKMLNLKNKLKKVLHSANQSRSQQSTKSQASIENYTQRESSTLFNNDHHKFFKFLNSFIFTDEDESTXDSXRVKIDNKLQINVDHFDNEHICIVYVISRLEGDAAEHIFAXRQHDASHLYISIDKLFKHLKEIYDELNRNXKCRCKYNALRQADKSFNVFYFNFMKLFSYLEYDDHTLMNDLQNKINNQLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKHAATSLSAVTTSIIEYVKSTIFSTSESVRLSIVCYICKISDHLFKNCS
Ga0272425_100086642	F057011	GAG	LCNQVEVLSEENYFEKSFLINVFLIAQNNSFSLXSLIDSNFVIYTLIHDKLVNKVCKKLEIQSILLTKEKLIXDYDEKLFKKVITHKILLNLIIESHKKLTVSMLIADINHHEAILSKFXMNKNEILLNMHHDTIIFSDQLDTSISIFSVLSIMKHLSXSRSTLISSVAHKILKHSAFIISKEFFSIQNINVAFFQTLMNXSK
Ga0272425_100086644	F055318	N/A	MLRDDEALCINRVQSFRDRADFNNLNAHATSNLHADEKVK
Ga0272425_100086645	F100079	N/A	MFRHKHSIYEQYADEKTLLKEEKHKRINKEXLNYAVXLKV
Ga0272425_100086651	F038008	N/A	MKMKXSHLYMMTFXSESSRIVIVANKKISINQHHFDTFTSKQRIYLNDSDSKENVTTIAMRINXELNKRLKKLTLIIIHHEELKELIVKMKYFTNIVTENXKCHEKIYKVYSDSQTSLKTVKAMISTKDQTRLQXVQIAHENIQS
Ga0272425_100086652	F064254	N/A	MRKLYKFISFLFFLSFIXFFDDITAXNXFNMLIENIIXIIIIAALIISKSFLKFVMFSSHCIAFHSTFHLKHVNKMCLINIQSLLHLHIIIATSSTHLSCRNXLKSIFLMRSCVNNALXDFAXFLCSHRCXCVIFDVRYXKXAALNLFFQTILHVYLICFCLSISLVITSVC