Scaffold Ga0272425_1000847

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000847
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63002
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (22.39%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F021452	Metagenome	218	Y
F070710	Metagenome	122	Y
F086376	Metagenome	110	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100084732	F098340	N/A	MIKVVVYQTLVKNKKIKIFFLIISEINKALSSVEDFMKLNKVIFVMSLSELKKKLLIVYHDFLNVFNKEKTTQLLLHQSYDHKIELKDES
Ga0272425_100084739	F000597	N/A	MKDVLISSMMSMSDDFFASESLTIECVLSSNEISYSLKSLIDIEAVDYSFIDEVIVQIVCDQLQIKSLTLIKAKSIREFNDHYAKKLITHVIYLNLTVQDHTIDTVFMLIIQLNQHQIILEKTXMNKIDLVIDM
Ga0272425_100084740	F005901	N/A	VISRLEDDAAEHIFAXCHHDASHSYILIYKLFEHLKEIYNELNRNQKCCCKYNALRQADKSFNVFYFNFMKLFNYLEYNDCTLMNDLQNKINNRLQNTLSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRSVIVKVTVVSDKCIATSLSMMTSVINYVKSIIFSIIFSTSESDRAKSSIICYICKILKHLFKNCSQNKINTFASYAFTLRLQKIVISKNKENKKMSFENSEAKN
Ga0272425_100084746	F070710	N/A	MIKQSFLQILQYNIRKSLKIQKLFLINREIRDFDIVVIQKQSCNINDIQSFNSTHNFFYLVKNTSSQSRTCIYVNKHLRLNQXMIETVESDICSIRILTHNTDNKTQTLQLINIYNSCSLFSTSTEKSSIISRLSELLKDDCKQLIMRDFNLHHSH
Ga0272425_100084750	F086376	N/A	MRHACNKFNKVTSEFLDQQFSTHTMIKSIESESVSIARYDFQNVKRELLLSQNXAASKKEKDMNAMLNTEKKNMNALFFVYKMIKININEKLNAXITANETDDIIIFIKYMLHQHDIEIKIHNDMIQILKNVNEINIILKITQTRLQKENKDKNMIIHHLKAALS
Ga0272425_100084756	F021452	N/A	MIENDILIFCFISMSDDLFDFKSFIVDVILNNLEKIFKSFTLIDIEVIDMTFIDESLMSELCKHFDIQSISLLKSKSIXLYDEIFDQKSITYALYTSIMIQEHKNEMMFLLIIHLNQHKTIIENFXLKRNQILINSAND
Ga0272425_100084757	F098340	GAG	MIKVVIYXTLVKNKKIKIFFLIISEINKVLSSVEDFMKLNEVIFVMSLSELKKKLSIIYHNFLNVFDKEKIMQLFLHXSYDHKIKLEDES