Scaffold Ga0272425_1000822

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000822
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63923
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (38.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F011463	Metagenome	290	Y
F029296	Metagenome	188	Y
F050043	Metagenome	145	Y
F057010	Metagenome	136	N
F059497	Metagenome	133	Y
F075494	Metagenome	118	Y
F078020	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100082213	F075494	GAG	MFIHSVSERRYSVNHVKSMLSDKIYCTXVINKVEKMSVHNVSENTSMCSAVHVRSMLLKVMILAMQKMHLDEVHFSRDRISRSESENLRKHDDETLTHKDCNVAEKQLNSVAETVDCKQLISCAIVKVLIIHETTYNFSSKFVVKFIKILQQEDEFAVKLKADEMMSI
Ga0272425_100082218	F050043	N/A	MIKIXSXLEKDEIEENEKLRKTERMINKSTIIIHSCLHFIILTTSFTXKINNVYVLSTRHHCCHLHQLHITYTIYNIIYVHYNXRXIIIQSKVSLFLIFSQRFEDFYQEFLERINECTSLIIIVNKDINSXSQEXTHLKKKTIVMMNXHIEIKSETKVRS
Ga0272425_100082221	F011463	N/A	MRLCKDLKDKQLNLYQITVKVNIFYHLHLSVSMKHLHLMFSSKLLRLYSEDSLSEQHSESFRLIIIKDDEHXKINNILNFRRYQDQVQYKVKXINLDRNNEXYYVDKEKFDDSEKVLNEFHKLYSNKSR
Ga0272425_100082226	F029296	N/A	MSKLLIFDHQQLKKIKQITETQMNKHRQDVIYEVDDQVXLVFENIKITKSCKNLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSVFSLKCLRPLLNDSLSRQHSEFSRSLIIEENEEHXKVDNILNFRRYRERLQYKVKXIEIDHDDEXYYVDKEKFDDSKKVLNEFHKLYLNKSH
Ga0272425_100082229	F059497	GAGG	MSIEDIDREIVYNTQCELNVLDVAFINASAQNLEDIKVKLSLKYQNFIDVFDRAQVDKLSSHRSYDHKIELTNDVTSSKCRAY
Ga0272425_10008223	F008169	N/A	MPSHSLTEERFEEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFAETVISFVFYEIXKARSLVLDEETDXLYELDKQQEDEIKELKTRLQVKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQDKLKINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCINLYKIVDDLLKELAQLFDDSNKKVNFRKEYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLXFVXVDQLVQPDFLKEIHFYLIHLNNDQRVIREIKNKIKRVDDLSKTIFHRATVVTQSVDHSKSDQLKSRDAVLTSVKEADILVESCFICHKSDHSSKECLDRPTRINAVKNEYDRFDFNLNFDSKN
Ga0272425_100082230	F078020	N/A	MQFFFDRLINAXKDAALTLNIEKFFFEAVEADRXSTLRVELIEEFDDHDHFECEALTDIKKTEMRASNXFEKTMTLFCISSSISFLFIQNFSNMTSXXSISVINIETVNFLXLSTVRLGRILXVMIFLVSFSSYSLINFSLASCMSXISSFXHIXLTSFVXIKM
Ga0272425_100082231	F057010	N/A	MSCLFKERFKALFFIVEDNNSFAEIITSFMTMKALKKRCEELKARLQAREIISSSSTYSECSRSQKILNSSLFTDEKNSIXKNXYEKVQNKLEINVDLFSSEXVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIINLKNKINSRLRFAXVTQLIQLSTLKEIRFYLIQLNNNQRAIQEIKNREAMIKAXTTKQIIYAEKSVKATRRIIEMKMTDQSKPRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDEFDHSLNFDSESDSKN