Scaffold Ga0272425_1000797

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000797
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65119
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (18.31%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F003820	Metagenome	466	Y
F009377	Metagenome	318	Y
F010214	Metagenome	306	Y
F036035	Metagenome	170	Y
F087980	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100079718	F010214	GAG	MKVSVLFDYDASSLLCSSLTIFYTTMFRFDLRFEDERRFLCTRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFPRE
Ga0272425_100079724	F003820	N/A	LQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVLDKCAATSLSMMTSIIDYVKSIIFSTSEFDQAKSSIICYICKISKHLFKNCSQNKINTFASHAFISRLHEIVILKNKENEKMSSFEDSEAKN
Ga0272425_100079746	F001951	N/A	MIITKLKFIDSLRNKREKDEDTVKTTVTKMIIFELKKLLVNAKMLLTLMNEIMTKTKQD
Ga0272425_100079748	F087980	N/A	MKSFHNFSINDEHAVEQFTQSVIENSVEIFCTMQKLQNQVQQHDVIILFSFIIFNSSIYIKLNSQSLMMITQIIAQILNNQSLFIIHFSANSVAVFIASRFEKFLDISEYKKNKNQLNA
Ga0272425_100079757	F036035	N/A	MQREHHELEKASRNHERDNSDHSNNTLDKHTEPISDCDVIKESNERERK
Ga0272425_100079761	F009377	N/A	LLELRKFDKVTSESLDQQLCTHIMTRSSESASIAHYDLQNARRESLLSQNQTASEEKDTNASSDTEEKNMNALLFDHEMIKISINTELNAXINTHKADNIIVFIKYIYQQHDIEIKIHNDMIQMLKDVNKINITLKIMQTRLQKENRDKNVIIHHLKAALSQQSTLISEDQSSKSIKLLDSSLFKDSSQNVNNXLSRMQNKLKTNKNHFSIKELKIVYIESRVSEAAIKHIASRMRNTSLNLFLKVEEVLSIINKMYDNLNHCHTTQRQYLKLY