Scaffold Ga0272425_1000789

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000789
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65286
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (28.57%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020121	Metagenome	225	Y
F061402	Metagenome	131	Y
F065268	Metagenome	127	Y
F086375	Metagenome	110	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100078925	F086375	N/A	MFTLFVNSKSIASXNHGENXFNEIKEHYKQQNNDHVVIFKQLHKLRQFNVXQEANKIDKAAMKDNVRDEIEQEQKNKDIHDNASQ
Ga0272425_100078936	F065268	N/A	MTRSTESESVSITRYDFQNVRRESLLSQNXTASEEEDTNASSDTEEENMNVLLFDHEMIKINISTELNAXINVHEVDDIVVFIKYIC
Ga0272425_100078946	F020121	GAG	MFIAQIIYEFNVNLSCCSCSKYFVEDEVXLNACNFSIAHLIVKLDDHNVDLFKIKCVFKNNSLIIELNLSTFMKIYSIFHVTLLSHIISDFLLNQRQKLXELIIIKNNKRFXYVNSILNFKRDKCYNSSLLKYYVNXKDHFSTXKSFHLLNNCEQALNEYHLVNSVVKESHVLSCMMSQCQCQEL
Ga0272425_100078949	F086377	N/A	MIQHFXDQRQRISILDCDNIQISIVHAEAKFFFEFLNEENKDNHLRVIDLNEIFA
Ga0272425_100078953	F061402	N/A	MQDDXFIXLFMIEFVNNNAISSSIEQLMFFLNKSFHSHMSFDLNSIEYEIIRARIEADKAKNIFKHMK