Scaffold Ga0272425_1000778

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000778
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65814
• Total Scaffold Genes: 68
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (32.35%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017941	Metagenome	237	Y
F018839	Metagenome	232	Y
F036994	Metagenome	168	Y
F046102	Metagenome	151	Y
F064252	Metagenome	128	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100077835	F046102	GAGG	VTFIKDAMKDVLISSTMSSSNDFFASKSLTTECVLSSNEISYSLKSLIDIEVTDYSFIDELIVQDVCDHLQIESLSLIKLKSIRKFDDYYAKKLITHAIYLNLTVQDHMKCFVFMLITQLDQHQMILRKTXMNKIKMIIDMKDDLLQFSSFKAHIKAFIKAHSTVLSSKKIAIEQKSSISTQILKRFISSVIT
Ga0272425_100077836	F018839	N/A	MMIMKVVTFNHLTSDLYVAVSIIAMFIELKDEAKLIELNDFMILLNEDDFSLS
Ga0272425_100077846	F036994	AGCAG	MXNRMIIKADSLVDLLIEEIDYRLALEADSLVAREREVDRFTDR
Ga0272425_100077854	F064252	GAG	LSLKKKQRSANQSRSQQSTKSQASTENYTQRELFTLFDNDHHKFFKFSNLFIFTDEDELTXDSXRVKINDKLQTNVNHFNNENICIVYVISRLEDDAAEHIYAQYQHDALHSYISIDELFEHLKEIYDELNRNQKCCCKYNALRQADKSFNVFYFNFMKLFSYLEYDNCTLMNNLQNKINNRLQNALSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLCTVIVKVTVVPDKRAATSLSMMTLIIDYVKFIIFSISESDQAKSSIICYICKTSRHLFKNCSQNKINTSASHAFISRLHEIIISKNKENEKMSSFEDSEAKN
Ga0272425_100077857	F017941	N/A	MKIADLKKNISESIYKQILKTNEIDENCTLLREAIARDETQYEDIK
Ga0272425_100077859	F094626	N/A	MFLNERNIITTRLFKKLDDKMLNSFKITDSVDFFYKLKLLKTMCIHNVFHSELLCLVINDFLSDQKNEFSRSIVINDEDE