Scaffold Ga0272425_1000772

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000772
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66088
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (49.37%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F019584	Metagenome	228	Y
F028978	Metagenome	189	Y
F037508	Metagenome	167	Y
F041516	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100077213	F037508	N/A	VIFRLKDDADQQIYAKRRVDALSLYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSFYSEFTRIFSFLNYDDVTLMNNIQNKINNHLQNVLSVCLIKFSSLNKLKIFLQDVNNKQRVNYQLRDKQ
Ga0272425_100077214	F001253	GAGG	VTFIKDVMKDVLISSTMSSSNDLFASKSLTTEYVLSSNKISYSLKSLIDTEVADYSFIDELIAQNVCDQLQIESLSLIKLKSIRRFNDHYAKKLITHAIYLNLTVQDHMKRFVSMLIT
Ga0272425_100077218	F028978	N/A	MKIADLKEKENDESIYRLILEVNRINKNCILLREVVLKDEAQYEGTKLRDCRVQNEILYRDDLL
Ga0272425_100077225	F019584	N/A	MIKAQTTKQIIYAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDKFDRSLNFDSESDSKN
Ga0272425_100077237	F041516	N/A	MIQKVIYIHEAYNLSLKDHEIIHEKENLSDIKKTLHMLKESILVEDFNLHHFT