Scaffold Ga0272425_1000755

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000755
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66713
• Total Scaffold Genes: 59
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (13.56%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F003820	Metagenome	466	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F024448	Metagenome	205	Y
F037509	Metagenome	167	Y
F055319	Metagenome	138	Y
F057011	Metagenome	136	Y
F065269	Metagenome	127	Y
F074204	Metagenome	119	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100075511	F057011	GAG	LFELXLRFKFKKLAISFRVIEEIKIISLCNQVEVLSEENYFEKSFLINVFLIAQNNSFSLQSLIDSDFVVYTLIHNKLVNKVCKKLEIQSILLIKEKLIXDYDEKLFKKVITHKILLNLIIKSHKKLTVSMLITDIDHHEAILSKFXMNKNEILLNMHHDTIIFPDQLNISISIFSISSNMKHLSXSRSTLTSSAAHSKIFKMLKHSVSFIQKESFLIQNIDVVSFQALIKKRIRQRFLLCSLKTSIEKSFTILNVN
Ga0272425_100075519	F065269	N/A	MTRSTESESVSIAHYDFQNVRKESLLSQNQTTSEEKDMNASSDTEEKNMNMLLFDHEMIKISISTELNA
Ga0272425_100075521	F037509	N/A	MILISLFIQVHSTDNEMNIKKFVYLMINDIERQNNIKKSIESMKIYNHXIARESKAHSVHACSNQSIKSRD
Ga0272425_100075527	F010214	N/A	MRVSVLFDYDTSSLLCFSLMIFYTTMFRFDSQFEDERRFLCTRDARDYNVCRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALDFSCE
Ga0272425_100075530	F024448	N/A	MKDVLISSTISMLDDSFASESLTTEYVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIQEFNNHYAKKLIIHVIYLNLTVQDHTIDTASMLITXLNQHQMIFEKTXMNKINLVIDMQINFLRFLNFNSTSQKLIALFSSNKSITKRKSLTSTHILKRSFTFITS
Ga0272425_100075531	F003820	N/A	MKLFNYLDYDDCTLMNNLQNKINNRLQNALSVCSKNFTSLTRLRIFLQNVNNKQRVNYQLRSERYTVIIKVTVVSDKCVTLLLVTTSIIDYVKLTISFTSESVRSSIICYICKTLSHLSKNCSQNKINTFASXAFTFHLHEIIISKNKENEKMFSFEDSEAKN
Ga0272425_10007554	F008735	N/A	VNHFIYDELXLNINNLDSMREIIIIIHVHALYQTLLSCIQLIFILLILKYVEKLLKSKSNEDSDRICKEVNNKKRLIVQDLYNDLSYYCKKLRIQFYINXRIENDEXKXDDNIMLLNLILKLSHCTKDLKXIFDHTLSELFNNMLIIDXKIVKXLHLSERIIKQDFNVXKYCRKCKSFIMSKTELN
Ga0272425_100075540	F003820	N/A	LQNALSVCSKNFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKRAAISLSMTTSIIDYVKPTLSSISESARSSIICYICKTLDHLFKNCSQNKINTSASHAFISCLHEIIISKNKKNEKMSSFKNSETKN
Ga0272425_10007555	F001951	N/A	MIRVLSXTMIIMKFKFIDSLRNEKERDKDTIKTTVTKMMIFEFKKLLIDAEIFLTLMNETIMKMKXD
Ga0272425_100075553	F010214	N/A	MKVSVLFDYDTSSLLCSSLTIFYTTMSRFNSRFKDERRFLCIHDAHDCNVCRAVFSYSMIIIHXAEKYVMKERCTRXEDKVXLYXVILFFFXFDLCHVDIEXIVSIDVQSQSFDVXLXLMKENAFXLFSXALNFSCE
Ga0272425_100075554	F096307	N/A	MLYIIIIQIDVSFKENMLKYKKDVDLKDVCDTKKYVYHRNLLITRNTKKCVCLKDNKSXLKDVKKEKRYXVIFESNLSQI
Ga0272425_100075555	F010214	N/A	MRVSVLFDYDTSSLLCSSLTIFYTMMSRFDLRFEDERRFLCTRDARDCNVRRAVFSYSMIVIHXAEKYVMKERRTRXEGRVXLYXVTLFFSXFDLCHVDVEXIVSIDVRSQSFDVXLXSMKENAFXSFSXALNFPRE
Ga0272425_10007556	F055319	N/A	VKVRRLKLVRRLRLVNKMICIQISERDLAQRLNFSCKQXNFFIYIDDVIVVNVHDMQSEKLFI
Ga0272425_10007557	F074204	N/A	MIVFCILHQAQSKVFTFALINSEVFAYIFMNKFFTQQHHFFLHQLTHSCRLQEFDNQVTLINDITYVIEITIIFNEHIKKPFFYVIELN
Ga0272425_10007559	F002432	N/A	MQNDXMKXLFMMKFSKNFNIFSIISMTSFYFNQSFHSXMSFNSDTTDYETTCERLEARKANDIIIXMKELLIFNHQQLKKTKQIIEAQINKHRXDVIYEVNDXIXLFFRNIKTTRSCKDLKDKQLELYQITVKVEIFYHLCLSISMKQLHSMFSSKLLCSYSQDSLLEQHSKSSKSLTIENNDHXEIDDILNSKRYRDXI