Scaffold Ga0272425_1000753

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000753
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66910
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (51.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F018839	Metagenome	232	Y
F069514	Metagenome	123	Y
F094626	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100075310	F001253	N/A	VTFIKDMMKDVLISSTMSSSNDFFALKSLTTKYVLFNNEISYSLKSLIDIEAVDYLFIDELITQNVCDHLQIEFLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKCFVFMLII
Ga0272425_10007533	F094626	N/A	MFLNERNIVTVRFFKKLNDKMLDFFINLNFIDSSYKLKLSKFMHVHDVFHSDLLCFVVNDSLFNQKNELSDSIVINDENK
Ga0272425_10007534	F069514	GAG	MIEFKVNNTLFSIIFLISFFLNKDFHSCMNFELNVIKYENSHECLQMTKVENIFEHMNKTLKFAHELLVKT
Ga0272425_10007539	F018839	N/A	MMMITKVVTFNYLTSDLYIAIFIIAMFIESKNEVKLIKLNDFMILLNENDFLLS