Scaffold Ga0272425_1000717

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000717
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 68532
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (21.67%)
• Novel Protein Genes: 16
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (18.75%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F009377	Metagenome	318	Y
F010214	Metagenome	306	Y
F026450	Metagenome	197	Y
F035571	Metagenome	171	Y
F050043	Metagenome	145	Y
F051591	Metagenome	143	Y
F075493	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100071712	F051591	N/A	MLDAIALYLVYQSSCVISLRIVMTDLDLLSCTSRKGKTDSDLIRNAVLLXNNVVFCAIFKCKRVXFRFFCQYAVFCAVLKSIDDFFFSCEFALRFINQITVXIDDSFFCVDELSFRRRFXPAXARKISIFDFXLVTQSSVKLLSRMRACFNHMIVLYNLSIDLIYHMLR
Ga0272425_100071717	F010214	N/A	MKVSVLFDYDASSLLCSSLTIFYTTMFRFDSXFKDERRFLCTHDAHDYNVRRAVFSYSMIIIHXAEKYVMKEKCTXXEDRVXLYXVILFFFXFDLCHVNVEXIVSINVQLQSFNVXLXSMKKNAFXSFFXTFNFSCE
Ga0272425_100071722	F075493	N/A	MQSVQAMHEYMLRCLMTLFAVTLQAIHVXNVSKVQINVQIYAFNFNVHCKNAFCFLKIIMHLYYLIAQMQSLCXDCIDVCNTFSVFFPSLISLILVILLYCNVIACXNHCEEENVSFASQLYLCIFLNKDIQKYYFLDDKXARNDAINSCQMSMY
Ga0272425_100071723	F035571	GAG	MTQLTLVKXACISLHACLIFCIQSLIQLYSVILFCSMFKXTCSKLMYVSVFKVSMFTLLNTSATXHRIXFXSVSSLHSLLNNSSFLSRXCQTDASNAISDLTTAEYTCLAFVKIASHVKTSRQLSVSILVTXFIFICRRCASHCSFMFNCIFKTHMSDFNLIIELSIYMLVIMLNLFDFLVKCVSSYFSDANVVSXVQAHFAQMLYALLNVLQISSVNLL
Ga0272425_100071729	F008115	N/A	MNFITELSLSEDYNVICTIICHLIKEHHYVFCHXRDNNISVEEMIXIMLXNVYRLHDLLSSIVLNRDFQFISTMXKSLCKRLRITASLFTVYHSKMNDQTKXVNQDVERELRIYCNYMQNDXVKXISMIKFSDNFNIFSIISMISFYFNKDFHSRMSFDSDTTDDEITRERLKARKADDIVIQMKELLSFDCQQLKKTKLIIEAQINKHRRNVIYEVGDXVXLFFRNVKIMRSCKDLKDKQLESYQITVKAKIFYHLHLSVSMKHLHSMFSSKLLRSYSEDSLSEQHAEFLRLIIIDDNNDEH
Ga0272425_100071734	F010214	N/A	MRVSVLFDYDTSSLLCFSLMIFYTMMSXFDLXFKDERRFLCTCDAHDCNIRRAVFSYSMIVIHXAEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDMQSQSFNVXLXSMKENAFXLFSXALNFSCK
Ga0272425_100071739	F010214	N/A	MKVSVLFDYDALSLLCSSLMIFYTTMFRFNLRFKDERRFLCTRDARDCNVRKAVFSYSMIVIHXAEKYVMKERCIXXEDRVXLYXVTFFFSXFDLCHVNIEXIVSINMQSQSFNVXLXLMKENAFXSFSXALNFSHE
Ga0272425_10007174	F010214	GAG	MKVSVLFDYDTSSLLCSSLTIFYTTMFRFNSXFKDERCFLYTHDAHDCNIRRAVFFYSMIIIHXAEKYVIKERCTRXEDKVXLYXVTLFFSXFDLCHVDVEXIVSINMQLQSFDVXLXSMKENAFXSFSXALNFSRE
Ga0272425_100071748	F050043	N/A	MIKIESXLKKNEVEENKKLKETERAINKSTIIIHFCLCFIILTTSFTQKINNVYALFTCHHCCHLHQLHITYTIYNVIYTHYNQRXIIIQLKVSLFLVFLQRFEDFYXELLEXINKCTSSFIRVNKDINYXDQEXTHLEEKTIIMMNXLIEIRSETKVKD
Ga0272425_10007175	F008115	N/A	MNFITELFLSENYNVICMIICRLFKEHHYVFYHXKDNDISIEETVXIMLXNVYXLHDLLSSIVSNRNFQFISIMXQSLCKRLKIKVNLLTVYHSEINDQLKXANQDVERELQTYCNYMQNDXVKXLSMMKFSDNFNTFSTILMISFYFNKNFHSXMSFDSDTTDYKTTHQRIEARKINDIVTXMSELLIFNHQQLKKIKQITEAQMNKHKRDIIYEVDDQVXLVFENIKITRSCKNLKDKQLNLYSITVKVEIFYRLQLSRSMKHIHLMFSLKCLQSSSNNLLLKQHSELSRLLIIEENEKHXEVDDILNFRRYKERLQYKVK
Ga0272425_100071750	F010214	N/A	MRVSVLFNYDASSLLCSSLMIFYTMMSRFNSXFKDERRFLCTRDAHDCNVRRAVFFYSMIVIHXAEKYVMKERCTXXEDRVXLYXVILFFSXFDLCHVDVEXIVSINMQLQSFDVXLXSMKENAFXSFSXALNFSRE
Ga0272425_100071751	F075493	N/A	MQSVQAVHEYMLRHLMISFAVTLXTIHVXNVFKVQINIQIYAFDFDVHCKNAFCFLKIITHLYHLIAQMXSLCXDCIDVYNTFSVLFSSLISLIFVILCYCDAIACXNHYEEEDASSASXLYLRTLLNEDIQKYYFLDDKXEKNDAINSR
Ga0272425_100071752	F035571	GAG	MTQLTLVKXARISLHACLIFCIRSLIQLCNVILFYNMFKXTCSELVYVSVFRVSMFTFLNASATXCRIXFXSVSSLHSLLNSSSFLSCXCQTDASNAISDLTTAEYTCLTFVKIASHVKTSRXLSVSILMTXFIFIYXRCMFHCSFVFSCTSRIHTSDFNLITELSIYMLIIMLNLFDFLVKCVSSYFSDANVASXVQAHFAQTLCTLLNVLQISSVNLL
Ga0272425_100071759	F009377	N/A	MIRSTELESESVSIARYELQNAERESLLSQNXTASEEEDMNVSLNTEEENMNALFFNHEIIKISISIELNAXISTYEADNLVAFIKYICQQHDIEIKTYNDMIQMLNDVNKINIKLKAINIKLKATQTTLNAVQMRLQKEMKKKNVIIHHLEATSSQLSTSISKDXFSKSIKLSDSFLFEDSRQNVNNXLSXMQNKLKMNKNHFSIEEMKIAYVKSQVSEMMIKHIALRMKDTITTFCFNXSYXQRFXRQRPIEAYDILNRSTSYRAQSYD
Ga0272425_100071760	F051591	N/A	MLDAIALYFRYRSSRVISLRIVTTDLDLLPCASRKGKTDSDLIRNALLLXNNVVLCATFERKEVRFRFLRQYTVFCVVLKSLDDLFFSCEFALRFINQITVXIDDSFFCVDELLFRRRFWPAXARKILIFDFXLATQSSVKLLSRMRACFNRTIVLYNLSIDLIYHMLR
Ga0272425_10007178	F026450	N/A	MTMKALKKRCEELKARLQAREVTSSSSTYSERSRSQKILDSSLFTDEKNSIXENXYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSKRERDCFNSYKIVDELLKELAQLFNDSDKEVNFCRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSQLXFA