Scaffold Ga0272425_1000711

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000711
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69264
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (13.92%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F008668	Metagenome	329	Y
F011463	Metagenome	290	Y
F020121	Metagenome	225	Y
F021896	Metagenome	216	Y
F038009	Metagenome	166	Y
F046102	Metagenome	151	Y
F086377	Metagenome	110	Y
F089602	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10007112	F046102	GAGG	VTFIKDAMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFIFMLITXLDQRQMILEKTXMNKIKMTIDMKDDRLQFSSFEAHIKASIKAHSTVLSSKKIAIEQKSSTF
Ga0272425_100071120	F000597	N/A	MKDVLISSMISMSDDSFASESLTIECILSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCNQLQIESLTLIKAKSIREFDDHYVKKLIIHVLYSNLTVQDHTIDTAFMLITXLD
Ga0272425_100071125	F020121	GAG	MKKLIEHLHDEMLITQIIYKFNVNLSCHSYFKYFVKDEVXLNACNLSIIHLAVKLNDHNVDLFKIKYVFKNNSLIIELNLSTFMKIYSIFHVILLSYIASDFLSSQRQKSQELIIIKNDERFXYVNSILNFKHDKCYNSSLLMLKISIERVIXMSFN
Ga0272425_100071145	F021896	N/A	MMKNNLESEDFLKNVECNLTFLKSDKKYIFSDEMNERDSYFTIVIDKSFIEVHEI
Ga0272425_100071147	F038009	N/A	MIKALNFQLNYVKLYKRLIELICSRNNRSFRKKRISTLDFXXVFFLNDLKNTTRSFLFQTRNKTEQDLFLVNELSINXLFVSKRRVILLLVSRRETELLLASKLRTELLLVSELKTELLLSSKXETKLLLASELKTELLFXANEKLNCFLQANXVLNCFLXTICKLNCFL
Ga0272425_100071151	F001951	N/A	MTKLKFIDSLKNEKERDEDTVETTVTEMMILELKELLIDAETFLTLMNKTMTKTKQD
Ga0272425_100071160	F005901	N/A	MKSXASIENYTQRESFTLFNNNHHKFFKFLNSFIFTDEDESTXNSXRIKIDDKLQTNVDHFNNKNICIVYVISRLEDDAAEHIFAXCQHDALHSYISINELFEHLKEIYDELNKNRKCHRKYNVLKQADKSFNVFYFNFMKLFSYLKYDDCTLMNNLQNKINNRLQNALSVCSKNFTSLTHLRIFLQDVNSKQRVNYQLRSERCIVIIKVTVVSDKHVTTFLSAVMTLIIDYVKFIIFSIFESDRAKSSIICYICKTLKHLFKNCSQNKINISAS
Ga0272425_100071161	F000597	N/A	MKDVLISSTTSMSDDSFASESLTTECVLSSNKISYSLKSLIDIEAADYSFINEVTAQIVCDQLQIESLTLIKAKSIREFNDHYAKKLIAHVIYLNLTV
Ga0272425_100071164	F011463	AGG	MRHQLXSKXLSLIIFQKVKTMRSCKDLKDKQLELYQIMIKVEIFYHLRLSISMNQLHSMFSSKLLCSYFNDLLSEQHSKSLRLLTIKDDDHXKIDDILNSRRYXDRIQYKVKXTELNRDDEXYYVNKEEFKSLKEVLVEFHKLYSDKSH
Ga0272425_100071165	F008668	GAG	MSFDSDTTDYETICERLKARKVDDIIIQMKELLIFDRQQLKKTKQIIEAQVNKHR
Ga0272425_100071170	F089602	N/A	MKDEXSSLIEILSEEDNNLSDIIDIAFHAVNQQKVFHQETFFLLIKEIVVVDKAICVLLQSFTKI
Ga0272425_100071173	F086377	N/A	MIQRFXDQRQRISIFNDDSVQILIVHAEAKFFFEFLDEENKDDHLKAIDLNELFAQILI