Scaffold Ga0272425_1000708

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000708
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 69371
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (54.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F005901	Metagenome	386	Y
F019584	Metagenome	228	Y
F021896	Metagenome	216	Y
F032102	Metagenome	180	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100070855	F021896	N/A	VTKNNLESEDFFKNVECNLTFLRLNKEYIFSDEMSERDSYFTIVIDEFFIKVREI
Ga0272425_100070857	F001951	N/A	MIMMKFRFIDSLKDEKERDEDTVETTVTEVMILEFKELLVNAEMLLTLTNETMMKTKRD
Ga0272425_100070859	F005901	N/A	VIFRLEDDAAEHIFAQHHHDTSHSYISIYELLKHLEEIYENQNKNQKCHRKYNALRQADKFFNVFYFNFMKLFSYLDYDDCILMNDLQNKINNRLQNALSVCFKDFASLYCFKSFLQEVNNKQRVNYQLRSQLCTVIIKVTVVPDKCIATSLSAVMISIIEYVKLTIFSTSESVKSSIVCYICKISDHLFKNCS
Ga0272425_100070860	F000597	N/A	MSDDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVITQIVYDQLQIESLTLIKAKSIREFDDHYVKKFITHVIYSNLTVQDHTIDTASMLITRLNQHQMILEKT
Ga0272425_100070863	F019584	GAG	LIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAKTTKQIIFVEELIKATRRIIETKMTDQSKSHDAVLTNIKENDLLIENCFLCHKSDHMLRSCLNHSIKET
Ga0272425_100070866	F032102	N/A	MKIADLKKNISESIYKQILETNEIDENCTLLREAIARDETQYEDIKLKNCRTQNEILYHDSQL
Ga0272425_100070869	F000597	N/A	MKDVLISSMMSMSDDSFASESLTTEYVLSSNEISYSLKSLINIEAADYSFIDEVTAQIVCDQLQIKSLTLIKAKSIQEFDDHYAKKLIIYVIYSNLTVQDHMIDTTSMLITQLSQHQMILEKT
Ga0272425_100070871	F044226	GAG	MMKFSDNFNTFLTILMTSFYFNKDFHSRMSFNSDTTDYKMICQCIEARKIDDIVI