Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000687 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000687 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	70623
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (22.39%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

70623

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (22.39%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F036035	Metagenome	170	Y
F038008	Metagenome	166	Y
F065268	Metagenome	127	Y
F070710	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100068728	F038008	N/A	MKMNXSHFYTATFXSESSKIVIVANKKMSIKQYNLDTSVLKQRVYSNNSDSRDNVTMIAMKINXELNKRLRESTLIITHHDELKELVAKTKHLADVATVNQECHEKIYKVYSDSQTFLKTVKVMISTKDQTRLQXVQIAHESIXS
Ga0272425_100068729	F036035	N/A	MKDRMKDDAMQREHHELEKASRNHKCDDSDHSNDILNKHTESISDCDVIEESNEKEKK
Ga0272425_100068731	F065268	N/A	MTRSTELESKSVSIAHYKLRNAEKESLLSQNXIASEEEDMNASSNTEEKNMNALLFDHKMIKISISIELNAXISTHEADDIIVFIKYIC
Ga0272425_100068749	F001253	GAG	VTFIKDVMKDVLISSTTSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIREFDDHYAKKLIIHAIYLNLTVQDHMKRFVSMLITQLDQHQMIFGKT
Ga0272425_100068766	F070710	N/A	MHLMKKKKKNLRILQYNIRKSLKIQKSFLINREVRDFDIVVIQKQNHNINNIQSFNSAHNFFYLVKNTSSQSRTCIYVNKHLRLNQXMIETAESDICLIRILTHNTDDETQTLQLINIYNSCSLFFTSIKRSSIISRLSELLKDDCKQLIVRDFNLHHSH
Ga0272425_10006878	F036035	N/A	MKDRTKDNAMQRKHHELEKTSRNHERDDNNHSNDTFNKHTKSISDCDIIKESNEREKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000687

Overview

Ecosystem & Geography

Associated Families

Sequences