Scaffold Ga0272425_1000671

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000671
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71410
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (56.16%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F003820	Metagenome	466	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100067166	F013598	N/A	MNFIIDLFDSYNYNVILTVICRLLKERHYIFCIIDDEDITVEKTAEMLLQ
Ga0272425_100067167	F017941	N/A	MKIADLKKNNDQSIYRQVLDVNEIDENCMLLREAIARDEA
Ga0272425_100067170	F000597	GAG	MMKEMLISLMMSMSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFINKVTVQIVCDQLQIEFLTLIKAKSIREFDDHYAKKLIIHVIYLNLTVQDHTINITFMLIT
Ga0272425_100067171	F003820	N/A	MKLFSYLDYDDCTLMNNLQNKINNHLQNALSVCFEDFTSLHHLKIFLQDVNNKQRVNYQLHSQLCTITVKVTVISDKCIATSLSVTTSIINYVKSIFFSIFKSARSFIICYTCKISSYLFKNYSQNKINISASCAFILHLHEIIISKNKKNEKMSSFEDSEAKN