Scaffold Ga0272425_1000667

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000667
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71734
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 39 (54.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019584	Metagenome	228	Y
F055318	Metagenome	138	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100066718	F055318	N/A	LNDIETLYDDEALCVDRMQSFHDRADFDNLNAHATSNLHADEKVK
Ga0272425_10006675	F104131	N/A	MPHLFKERFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREIISSSSTYSERSRSQKILDSSLFTDEKNSI
Ga0272425_10006676	F019584	GAG	MIKAQTTKQIIYAEESVKATRRIIEMKMTDQSKPRDAVLTNVKENDLLIENCFLCHKSDHTSKECSNRSFRINALDDEFDHSLNFDSESDSKN