Scaffold Ga0272425_1000662

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000662
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 71896
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (16.88%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F011463	Metagenome	290	Y
F028367	Metagenome	191	Y
F038484	Metagenome	165	Y
F055318	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10006621	F011463	N/A	IEVQINKHRRNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLRLSVSMKHLHSMFSLKLLQSYSEDSLSEQHAESLRLIIINDDDDEHXKIDDILNFRCYQDRIQYKIKXKDLDRDNEXYYVNKDEFNDFEKVLNEFHMLYSRKSR
Ga0272425_100066215	F055318	N/A	MLHDDEALCINRVQSFRDRADFDNLNAHATSNLHADEKVK
Ga0272425_100066217	F038484	N/A	MCIARMLFAFXKSSRIFIILLLRCNFCAEIVLTSATRSLYFSHRXFHXSLXYCIIAMLLLVEIIVKKRMCYLHLDCIFASSXMKIFRSTIFLMMSKREMTXLTFVKXTCISLHACLISCVQSLTQLCSVILFCSMFRXTCSELMYVSVFKVSMFTLLNASATXHRVXFXSVFNLHSLLNSSSFLLRXCQTDASNAISDLTIAEYTCFAFVKIASHVKTSRRLSISILVTXFIFICRRCASHCSFMFSCIFKTCTFDFDLITELFICMLVIMLNLFDFLVKCVSSYFSDANVVS
Ga0272425_100066229	F028367	N/A	LYKLDEILLKENYFEKSFLINVHLILQNQSFNLHSLINNDLIIYIIIHINLVEXVCEELEIQFISLIKEKLIKEYDEKIFKKIITHKILLNLIIESYKKLMIFMLITDINHHEVILSKLXMNKNEILLNIQNDVIVFLN
Ga0272425_100066235	F010214	N/A	MXCLSKLLMKVSVLFNYDTSSLLCSSLMIFYTTMFXFNSQFKDKRRFLCTRDAHDCNVCRAVFFYSIIIIHXAEKYVMKKRCIXXKDRVXLYXVTLFFSXFDLCHINVEXIVSINMXLQSFNVXLXSMKENAFXLFSXTLNFPRE