Scaffold Ga0272425_1000659

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000659
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72295
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (60.42%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F021452	Metagenome	218	Y
F044226	Metagenome	154	Y
F061401	Metagenome	131	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100065910	F061401	N/A	LNNDQRVIREIKNKIKHINDLFKTIFHKVTVVTQSVDHSKSDQLKLHDAVLTNVKKADILVESCFICHKSDHSSKECFDRSTRINAVNNEYDRFDFNSNFDSKN
Ga0272425_100065912	F081945	N/A	MLSRSLTEECFEEFRNHFSQISDADSLKPQTKSSSAASFIHEDDESFAETIILLVFYEI
Ga0272425_100065917	F021452	N/A	MSDDSFDFKSFTVDVILNSLEKIFRSFALINIKVIDMTFIDESLMSKLCECFDIQSISLSKSKLIQLYDEISDRKSIIHTLYTLIMIQEHNNEMMFLLITHLEQHKIIIENL
Ga0272425_100065918	F081945	N/A	MFSCSLTEERFKEFRNRFSQISDADSSKSRTKSSSAASFIHEDDKSFAETIILLMFYEI
Ga0272425_100065919	F061401	N/A	LNNDQRVIREIKNKIKRVNDFSKTIFHRATVITQSVDHLKSDQLKSRDAVLTSIKEADILVESCFICHKSGHSFKECLDRSTRINAVNNEYDHFDFNSNFDSKN
Ga0272425_100065920	F006206	GAG	LCKLDEILSKENYFEKSFLIDTHLISQNQSFSLHSLIDSDSVIYMIIHSNLVDKVCEKLKIQSISLAKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIVDIDHHEVILSKF
Ga0272425_10006596	F044226	GAG	MMKFSDNFNTFSVISMISFYFNKEFHSRMSFDSDTTDYETTHERLEARKADNIVI
Ga0272425_10006599	F006206	GAG	LCKLDEILSKENYFEKSFLIDAHLISQNQSFSLRFLIDSDSVIYMIIHSNLVDKVCEKLGIQPISLAKEKLIKDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKL