Scaffold Ga0272425_1000656

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000656
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72666
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (39.33%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F036994	Metagenome	168	Y
F048018	Metagenome	148	Y
F055318	Metagenome	138	Y
F086376	Metagenome	110	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100065616	F036994	AGCAGG	MWDRMVIEAGSLVDLLIEEVGYRLAIEAGSLVARGREVDRFTGR
Ga0272425_100065618	F010214	GAG	VLFIYDASSLFCSSLMIFYTMMFRFDFQFKDERCFLCTCDARDCNVCRAAFSCSMIVIHCAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLCHVDVEXIVSINMRSQSFNVXLXSMKENAFXSFSXALDFSRRQIYDLTSSKEGELKLSQYISVIDESLLLRAL
Ga0272425_100065623	F055318	N/A	MLRDDEALCVDRMQSFRDCADFDNLNAHATKSNLHADEKVK
Ga0272425_100065637	F020121	GAG	MKKLTEHLRDEMLIAQIIYKFNVNLFHHFCSKYFVEDEVXLNVHNLSIIHFIIKLNDHNVDLFKIKCVFKNNSLIIELDFSAFMKIHSVFHVILLNHITSDFLLNQHQKSXEFVVIKNDEKFXYVNSILNFKHDRCYNSSLLKYYIN
Ga0272425_100065639	F048018	GAG	MIXRRSLSELSTYFLSXKYRXFSYSLHSIREILLXCCASLQSTSIIXAANLSLISTCFYNVXVRMSVKSSSRFRVSXSSXDLMFSTSNSLISKFMRTRICKNAKITENRCNXTESRVMICDXNFMTLMLKTSRVRFSTISRSKTXVFRIVXCXY
Ga0272425_100065641	F086377	N/A	MIQRFXNQRQRISILDYDSVQISIVHTEAKFFFKFLDEENRSNCLKVTDLNEIFAQILIQITTKF
Ga0272425_100065650	F002432	N/A	MXKSLCKRLRITASLFTVYHLKINDQTKRVNQDVERELRIYCNYMQNDXVKXIFMVKFNDNFNIFSIISMIFFYFNKEFHSXMSFDSDTTDYKTTYERLEARKADDIVIQMKELLSFDRQQLKKTKLIIEVQINKHRXNVIYEVDDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKARVFYHLRLSVSMKHLHSMFSSKLLQLYSEDSLSKQHAELLKLIIIDDDDNEHXKINDILNFKRYRGRIQYKVKXKDLDRDNEXYYVNKDEFNDFKKVLNEFHVLYSRKSR
Ga0272425_100065652	F009580	AGCAG	MIEVRVKRLKLVNKMICIQISERDLAQRLNFSYEQQDFFIYIDNITVVDVHDTQSEELFIXAFFNDFVQMLQFAVVAQLSLAADFLDFRNNQSLILNDDNDKA
Ga0272425_100065662	F086376	N/A	MTRSSESVSIACYELQNARRKSLLSQNQTASEEEDMNASSDTEEKNTNALFFNYEIIKISISTELNAXISTHEANDIIVFIKYICQQHDIEIKIHNDMIQMLEDVNEINITLKITQTHLQKEVRNKNVIIHHLKTALSQQSTLIFKNHFLKSIKLLNLFLFEDSMQNVDN