NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000641

Scaffold Ga0272425_1000641


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000641 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73277
Total Scaffold Genes90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (52.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F025887Metagenome199Y
F061402Metagenome131Y
F084912Metagenome111N
F104131Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100064134F006206GAGLCKLDEILSEENYFEKSFLIDAHLISQNQFFSLRSLIDSDSVVHTLIHANLVNRVCEKLEIQSILLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHKVILSKL
Ga0272425_100064138F006206GAGLCKLDEILSKENYFEKSFLIDAHLISQNQSFSLRSLIDSDSAVYMIIHSNLVDKVCEKLGIQPISLAKEKLIRDYDGKISKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKF
Ga0272425_100064144F025887N/AVTENDILIFCFISMSDDSFNFKSFTVDVILSSLEKIFRFFALIDTEVTDMTFIDESLMSELCECFDIQSILLSKSKSI
Ga0272425_100064151F084912N/AMTDQSKSRDAVLTSVKENDLLIENCFLCHKSDHTSKECLNRSFRINTLDDEFDHSLNFDSESDSKN
Ga0272425_100064152F104131N/AMSRLFKERFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREVTSSSSTYSERSRSQKILDSSLFTDEKNST
Ga0272425_100064157F061402N/AMIEFVDNNAISSSIEQSTFFLNKSFHSHMSFDSNSIEYEITQARIEAGKAENIFEHIK
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