Scaffold Ga0272425_1000633

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000633
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73604
• Total Scaffold Genes: 80
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (26.25%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F065268	Metagenome	127	Y
F079402	Metagenome	115	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100063334	F008115	N/A	MNFITELSLSEDYNVICIIICCLIKERHYVFCHXRDDDISVKETIXIMLXNVYXLHDLLSSIVLNRDSQFISTMXKSLCKQLRITASLFTVYHSKIDDQMKRVNQDIERELRIYCNYMQNDXVKXISMMKFSDNFNIFSIISMIFFYFNKEFHSRISFDSDMTDYETTHERLEARKADDIVIQMKELLSFNRQQLKKMKLIIEVQINKHRRNVIYEVDDXVXLFFRNVKTTRLCKDLKDKQLELYQITVKARVFYHLHLSISMKHLHSMFSLKLLRSYSEDLLSEQHAKSLRLIIIDDDDDEHXKINDILNFRRYRDRIQYKIKXKDLDKDNEXYYVDKDEFNDFEKVLNEFHVLYSRKS
Ga0272425_100063338	F006206	AGAAG	LCKLDEILSEENYFEKSFLIDVFLNSQNRSFNLCSLIDSDSVAHTLIHANLVNKVCKKLEIQFISLTKEKLIRDYDEKIFKKIITHKILLNLIIESHKKLTVSMLIVDINHHEVILSKL
Ga0272425_100063339	F008169	N/A	MSKHSFIKERFKEFRSRFSQISETDSSKLSSAESFINEDDESFAETVILSVSIKNXKTQCMILDRETDQLNELSKQRDNEIKELKTRLQTKEITFSDFIYSEHSKSQKISDSFXFTDEKNSTXKNXYDKIQNKLEINVDLFSNEXVKLSYVHFRLFNDAADVTQSKCKRDCVNFYKIIDDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFNEFYTQFQQLSFYLKYHEKQLIVDLKDKINSRLRFIXIDQLVQSDFLKKIRFYLIHLNNDQRVIREIKNKVNLIKHVNDLSKIIFHRAVVTQSINHSKSDHLKSCDAILTNVKKADILVEICFICHKSDHSFRECSDXSTRINAVNNEYDCFEFNFNSNFDSKN
Ga0272425_100063341	F079402	N/A	MXNKLKMNKNHFSIKEMKIAYVKSXVSETTIKHIAFRMRNTITNLFLEAEKILSIINKMYNDLNKHHTTQRQFLKLYQNKIFFHEF
Ga0272425_100063349	F065268	N/A	MSIAHYELQNAERESLLSQNXTASEEENMNASLNTEEENMNMLFFDHEMIKISISTKLNAXISAYETDDLVAFIKYICQQHDIEIKIHNCNDCFFNNTRYIQRSNSNHYY
Ga0272425_100063354	F087978	N/A	MFSSKLLQSYSEDLLSEQHSESLRLITIKDDEHXEINDILNFRRYRGQIQYKVKXTDLDRDDEXYYVDKEKFDDSVKVLNEFHKLYSNKPR