 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031453 Open in IMG/M |
| Scaffold ID | Ga0272425_1000612 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 75210 |
| Total Scaffold Genes | 91 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (51.65%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -75.8 | Long. (o) | 159.9 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F001253 | Metagenome | 736 | Y |
| F003820 | Metagenome | 466 | Y |
| F037508 | Metagenome | 167 | Y |
| F044226 | Metagenome | 154 | Y |
| F048685 | Metagenome | 147 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272425_100061270 | F003820 | N/A | MKLFSYLEYNDCTLMNDLQNKINNRLQNALSICSKDFTTLHRLKSFLQSVNNRQRVNYQLRSERCTIIAKVIVTPEKRATFLSAVTTSIIEYVKLTIFSTSESVRSSIVCYICKISSHLSKNCSQNKIDTSAS |
| Ga0272425_100061271 | F000597 | N/A | MKDVLISSTMSMSDDSFASESLITECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIQEFDDHYAKRLITHAIYLNLTVQDHMIDTASMLIIRLDQHQMILEKT |
| Ga0272425_100061275 | F048685 | GAG | VPRGFDDERIRYQRTTILTLNRMKIADLEKNNDQSIYKQVLETNEIDENCTLLREAIARDEAQYEGIKLKNCRTQNEILYHDSQL |
| Ga0272425_100061281 | F001253 | GAGG | VTFIKDAMKDVLISSTMSSSNDFFASKSLTIECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLIKLKSIRRFNDHYAKKLITHTIYSNLTVQDHMKRFISMLIT |
| Ga0272425_100061282 | F037508 | N/A | VIFRLEDDADQQIYAKCHVDAFSFYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKSFSSFYSEFTRIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIKFSSLDKLKIFLQDVNNKQRVNYQLRDEQ |
| Ga0272425_100061288 | F044226 | GAG | MMKFSDNFNIFSIISMTSFYFNKEFHFRMSFDSDTTDYETIYERLEARKADDIVI |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |