Scaffold Ga0272425_1000575

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000575
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77355
• Total Scaffold Genes: 106
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (41.51%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F025887	Metagenome	199	Y
F032102	Metagenome	180	Y
F061402	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100057535	F061402	N/A	MVEFVDNNAISSSIKQSTFFLNKSFHPHMSFDLNSIEYEITQARIEADKAENIFEHMK
Ga0272425_100057540	F025887	N/A	MPDDSFDFKSFTVDIILNSLEKIFKFFALINTKVTDMTFIDESLMSELCERFDIQSISLSKSKLI
Ga0272425_100057549	F025887	N/A	MFDDLFDFKSFTVDVILNSLEKIFRFFTLIDTEVTDMTFIDESLMSELCERFDIQSISLSKSKSIQLYDEISD
Ga0272425_100057554	F006206	N/A	LFQVRFRFEFRFKKLVISSKVIKEVEIISLCKLDEILSEENYFEKSFLIDAHLILQNQFFSLRSLINSDSVAHMLIHANLVNRVCEKLEIQSISLTKEKLIRDYDEKISKKIITHKILLNLIIESHKKLTVSMLIADIDHHEVILSKL
Ga0272425_100057558	F008668	N/A	MSFDSDTTDYEITCERLKARKANDIIIQMKELLSFNRQQLKKTKLIIEAQINKHRRDVIYEIDD
Ga0272425_100057563	F013598	N/A	MNFIIDLFDSYDYNAILTVICKLLKERHYISCITDDENITVEKTAEMLLQ
Ga0272425_100057564	F032102	N/A	MKIADLEKNVSESIYKQVLDVNEIDENCTLLREAKIRDEAQCKDIKLKNCRVQNEILYKDSQL
Ga0272425_100057567	F000597	N/A	MKDVLISSMMSMSNDSFASESLTIECVLSSNEINYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKTKSIREFDDYYAKKLITHVIYSNLTVQNHMIEIASMLITRLNQHQMILEKT