Scaffold Ga0272425_1000556

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000556
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 78706
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (26.67%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F036504	Metagenome	169	Y
F037509	Metagenome	167	Y
F042102	Metagenome	158	Y
F070712	Metagenome	122	Y
F091080	Metagenome	107	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100055613	F042102	N/A	MTRSTESESVSIAHYDFQNVRRESLLSQNRTASEEEDTNASSDTEEKNTNALLFNHEMIKISISTELNAXISTHEADDIVVFIKYMYQQHDIEIKTHNDMIQMLEDVNEINIMLKATQTCLQKEMKDKNMIIHHLETASSRQSTLISEDRFLKSIKLLDSSLFEDSTQNVNNXLSXMQNKLKTNKNHFSIEELKIAYIESRVDETAVKHIATQIRNMITNSFLEAEEILSIINKMYDDLNHHHMTQRQYLKLYQNKIFFHEFXMKFQRFSAELKYNNETLLNDLQHKISSDLQRATLNEXITNLNEFVNICMQVNVRLTELNAXLIIKVSAISAACSVASTSSAXLTSSVSAXKKLRRSNLNFIQKELFKKELCFKCRKSKHRAYDCLKMTQVHEIVANSKNDLLSSK
Ga0272425_100055619	F094625	N/A	MKLSHNLSINDERAVEQFAQSMIENSVEIFRAMQELQNQVQQHDVIILFSFIVFNSSIYIKLNSQFLAMIAQIIAQILNNQSFFVVHLFANFVAVFITSKFEKLFNISKYERNKDXLNAXKQSLIQRINVNDDRYLSHQVKIIYVESXLIINKKTHNLMN
Ga0272425_100055625	F037509	N/A	MILISILIQINSTDNETSTKKFVYLMINDIERQNNIKKLIKSMKTYDHVIAREFTAQSIASVQIN
Ga0272425_100055631	F000597	GAGG	VTFIKDVMKDVLISSTMSSSDDFFASKSLTTECVLFSNEISYSLKLLIDIKAADYSFINEVIAQIVCDQLQIELLTLIKAKSIREFDDHYAKKFITHVIYSNLTVQDHTINTASMLITQLNQH
Ga0272425_100055632	F036504	N/A	MSRQDTQSAEQRVNQKEAHFQRESSTLSDNENENDHHKFIKLLNSLIFIETDDFIXETXNIKIADKLDVNANHYSTEKIHIVYVIFRLEDDADQQIYAKHCVDAFSLYQSLSELLKHLKEIYEDQNLIRKCHHEYVALKQLNKLFSSFYSKFIKIFSFLNYDDITLMNDIQNKINNRLQNALSVCLIEFSSLDKLKIFLQDMNNKQRVNYQLRDKQRTVKSIAALKKRFVSSLTSASATNYVQLATFFTLESEXLRMSIICFNCKASNHLSKNCSQLKTSTLTFHAFISCLNEIIMLKEKKKLFTEKLKNEAKN
Ga0272425_100055653	F091080	N/A	MIILCXSRRVIKKNIISFLCSCIMINVYKACVINFQSKISSYNXINFDFDSDIDXISKHSHSFDIKDSLMKIMSMTSVFIRAKNLNIFSRLFKMTSTMNDLKLNESSDMLIKQNMSILLSIITLTKTDHFSNSQXSYALKLSXSNHMLYVLTSCIXSKVLS
Ga0272425_100055661	F000597	N/A	MKKMLISSTISMSNDSFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIYEVIAQIVCNQLQIESLTLIKAKSIREFNDYYAKKLITHAIYSNLTV
Ga0272425_100055670	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTFVNHSKLHDVTLTSVKETDLQTKSCFICHKSDHFFKECSDQILRINALENDKFDQFTLNSESDSDSKN