Scaffold Ga0272425_1000547

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000547
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 79482
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (14.29%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F002432	Metagenome	559	Y
F025887	Metagenome	199	Y
F028978	Metagenome	189	Y
F037509	Metagenome	167	Y
F042102	Metagenome	158	Y
F068292	Metagenome	124	Y
F070712	Metagenome	122	Y
F074203	Metagenome	119	Y
F086376	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100054717	F068292	N/A	MSRQDTQSAEQQVNQKEASMISVSIHRSEVERSLTFKAHFQRESFTLSDNENENDHHKFIKLSNSLIFIETDDSIXKTXNIKIADKLNVNVNYYSTEKICIVYVIFRLEDDADQQIYAKHCVDALSLYQSLSELLKHLKEIYEDQNLIQKCHHEYIALKQLNKLFSFFYSKFTRIFSFLNYDDVILMNNIQNKINNYLQNALSVCLIKFSSLDKFKIFLQDVNNKQQVNYQLRDEQXTVKLIATSKKHFVSSSTLTSVLTTNYVQLATFFIFEPE
Ga0272425_100054722	F025887	N/A	MSDDSFDFKSFIVDIILSNLEKIFRSLALINTEVTDMTFIDESLMSELCERFDIQSISLSKSKLIQLYDEISDQKSITHALYTSIMI
Ga0272425_100054723	F042102	AGAAG	MNASSNTEEKNMNALLFNHEMIKISISTELNAXISTHEADDIVAFIKYICQQHDIEIKIHNDMIQMLEDVNEINIMLKATQTRLQKEMRNKNVIIHHLETASSXQSTSISEDRFLKSIKLLNSSLFEDSTQNVNNXLSXMQNKLKTNKNHFSIKELKIAYIESXVDETVIKHIATXMRNTVTNSFLEAEEILSIINKMYNDLNHHHMTQQQYLKLYQNKIFFHEFXMKFQRFNVKLKYNNETLLDDLQHKISSDLQXATLNEXITNLNEFINICMQVNVRLTELNAXLIVKVSAISAAHSVASTSSARLTSSVSAXKKLRRSNLNPIQKELFKKELCFKCKKSEHKAYDCLKMIQVHEIAANSKNDLLSSK
Ga0272425_100054725	F002432	N/A	MKFSDNFNIFSITSMILFYFNKEFHFXMSFNSDTTDYETTHERLEARKADDIVIXMKELLNFNRQQLKKTKLIIEVQINKHKXNIIYEVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITVKVSVFYHLRLSVSMKHLHSMFSLKLLQSYSEDFLSEQHSKSLRSITIKDDEHXKINDILNFRRYXDXIQYKVKXTDLDRNDEXYYVDKEKFNDSKKVLNEFHKLYSNKSR
Ga0272425_100054730	F074203	N/A	MLFFFNHQASSFVRSLFQTNLIMFSHSSTEECFEEFRNRFSQIFDADSSKSRTKSSSAASFIHEDDKSFAEMIIFLMFYEIXKTQSLALNEETDQLYKLNKQQENEIKELKTKLQAKENTFSDFIYSEHSRSQKIPDSSLFTDEKNSTXENXYGKIQNKLKINVDLFSNEXVKLSYIHSXLFDDAAEITQTRRERDCVNLYRIVEDLLKELAQLFDDSNKEVNFCRKYYNLIQEFKKFSEFYTQFQRLSFYLDYHKKQLITDLKDKIHSHLXFI
Ga0272425_100054731	F001253	GAG	VTFIKDMMKDVLISSTMSSSDDFFASKSLTIKYVLFSNEISYSLKSLIDTEAADYSFIDELIAQKVCDHLQIESLSLIKLKSIRKFDDHYAKKLITHAIYSNLTVQDYIKHFIFMLITYVASVSRYSELV
Ga0272425_100054732	F086376	N/A	MIKSSESASIARYKLQNARRKSLLSQNQTASKEEDMNASSDTEEKNMNMLLFNYKMIKISISTEINAXISTHEADDIVVFIKYICQQHDIKIKTHNDMIQMLEDVNEINITLKITQMHLQKENRNKNVIIHHLKAALSXQSTSISED
Ga0272425_100054741	F028978	N/A	MKIADLEEKKNDESIYQLILEANRINENYILLREVVLKDEAQYKDTKLRNCRVQNKILYQDDLL
Ga0272425_10005476	F070712	GAG	MNNIKEKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTLVNHSKSCDAILTSVKNINLQAEICFICHKSDHTSRECSDQLRVNALKDDKFD
Ga0272425_10005479	F037509	N/A	MILILLFIQVYSTDNEMSIKKFVYLMINDIERQNNIKKSIKSTKTYDCXIARESKAHSVRTCSNQSIESRD