Scaffold Ga0272425_1000493

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000493
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83345
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (22.62%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F010214	Metagenome	306	Y
F021452	Metagenome	218	Y
F024448	Metagenome	205	Y
F055318	Metagenome	138	Y
F086376	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100049333	F055318	N/A	MLCDDEALCIDRMQSFRDHADFDNLNAHVTSNLHADEKVK
Ga0272425_100049336	F086376	N/A	VSIAYYELQNARRESLLSQNXAASEEEENMNAMLNTEEENMNALLFVYEMIKISINEELNAXITVNETDNIIIFIKYMLHQHNIEIKIHNDMIQMLKDVNETNITLKAMQTRLQKEMRNKNVIIHHLETASSQ
Ga0272425_100049338	F021452	N/A	MFDDSFNFKSFTVDIILNSLKKIFRFLTLINIEVIDMTFIDESLMSKLCKRFDIQSILLLKSKSIXLYDEISDXKLIIHALYTSIMIQEHKNEMMFLLITHLEQHKIIIENLXLKRNQILINSANDXLISSLKILLXF
Ga0272425_100049341	F024448	N/A	MKDVLISSTMSMSDDSFASEPLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHVIYSNLTVQDHTIDTAFMLITRLSQHQMILKKTXMNKIDLVIDMQIDSLRFSNFTLNSKSIVLLTSNKTITKQKSLTSTHILKRFFTISQLSLKSLSFSQFNEKSVKLIKQLKSCDATLTSA
Ga0272425_100049347	F002432	N/A	MKFSDNSNIFSITSMIFFYFNKEFHSRMSFDSDTMNYETTCEQLEAKKADDIVIXMKELLNFDRQQLKKMKLIIEVQINKHRXDVTYEVNDXVXLSFRNVKTTRLCKDLKDKQLDLYQITVKVSVFYHLRLSISMKHLHSMFSSKLLQSYSEDFLSEQHSESLRSITIKDDKHXEIDDILNFRRYRGRIQYKVKXTDLDKDDEXYYVDKEKFNNSEKVLNEFHKLYSNKSR
Ga0272425_100049351	F055318	GAG	LNDIEALRDDEALCIDRMQSFRDRADFDNLNAHAISNLHADKKVK
Ga0272425_100049353	F010214	N/A	MXCSSKLLMRVSVLFDYDASSLFCSSLMIFYTTMFXFNLQFEDERRFLCTRDARDCNVRRAVFSYSMIVIHXAEKYVMKERCTXXEDRVXLYXVILFFSXFNLCHVDVEXIVSINVRSQSFDVXLXSMKENAFXSFSXTLDFSCK