Scaffold Ga0272425

Basic Information
Taxon OID	3300031453 Open in IMG/M
Scaffold ID	Ga0272425_1000432 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031453 Open in IMG/M

Scaffold ID

Ga0272425_1000432 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88638
Total Scaffold Genes	74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (24.32%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

88638

Total Scaffold Genes

74 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (24.32%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-75.8	Long. (^o)	159.9	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-75.8

Long. (^o)

159.9

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F007840	Metagenome	343	Y
F008169	Metagenome	337	Y
F028368	Metagenome	191	Y
F028667	Metagenome	190	Y
F033266	Metagenome	177	Y
F036994	Metagenome	168	Y
F057010	Metagenome	136	N
F087978	Metagenome	109	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10004321	F033266	N/A	MSSHSLTEECFKEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFAETIISLVFYEIXKTRSLALDEETDQLYELDKQQEDEIKELKIRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQ
Ga0272425_100043212	F008169	N/A	MSSHSLTEEHFKEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFVETIILLMFYEIXKTXSLALNEETDQLYELNKQQEDEIKELKTRLQAKENISSDFIYSERSRSQKIPDSSLFTDEKNFTXKNXYGKIQNKLEINVDLFSNEXVKLNYIHSRLFNDAAEITQARCERDYVNLYKIVDDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHFRLXFIXVDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKIKRVNDLSKTIFHRATIVTQSINHLKSDQLKSRDAILTSVKEADILVESCFICHKSGHSSKECLNRSTRINAVNNKYDHFDFDSNFNSKN
Ga0272425_100043216	F087978	N/A	MFSSKLLQLYSENSLSEQHSESLRLITIEDDEHXKINDILNFRRYQDXIQYKVKXTNLDRNDEXYYVDKEKFNDSEKVLNEFHKLYSNKPR
Ga0272425_100043226	F028368	N/A	MLIHANLVNRVCKKLEIQPISLTKKKLIRDYDEKIFKKIIIHKILLNLIIESYKKLTVSMLIADIDHHEVILSKLXMNKNEILLNMXNDVIVFLNQLNTSISIFLISLNSKHSSXSXSTSLSSIIQTKTFIMLKRSVLTTTKKESFSIQSINAASFKTLLNXSKKNQTEVFALFMTDIDREITYNTQCNLNVLNVSSINEMTQNLKDIKVKLSSKYHEFLDVFDXVQLNKLLKE
Ga0272425_100043227	F008169	N/A	MLKHSSIKERFEEFQSCFSQIFETDSLKLSSAKSFINEDDKSFAETVILSVSIENXKTRCMILNRETDQLNELSKQQDNEIKELKTKLQTKEITSSDFIYSERSKSQKIPDSFXFTDEKNFTXKNXYDKIQNKLEINVNLFSNERVKLSYVHFRLFNDAADVTQSRRERDCVNIYKIVDDLLKELAELFNDSDKKVNFCRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSRLXFIXIDQLVQSDFLKEIHFYLIHLNNDQRVIQEIKNKVNLIKCVNDLSKIIFHKAVVTQSINHSKSDHLKSCNAILTSIKKADVLVETCFICHKSDHSFKECFDQPTKINAVNNEYNRFKFNFNSNFNSKN
Ga0272425_100043229	F000597	N/A	MKDVLISSTTSMLDDSFASESLTIECVLSSNEISYSLKSLIDIKAADYSFIDEVIAQIVYDQLQIKSLTLIKAKSIQEFNDHYVKKLIIHVIYLNLTVQDHTIDTVFMLITQLD
Ga0272425_100043231	F028667	N/A	MTRDSESVKSRTAYLLKSIASKQVSLISFNASTKSQNVAISXDINMSQQLRQXAIDQSDKIIKMLIELRDQRNMTLKLNEQXTDVQVDHIKRLNELKANQTTIDTQEETIIKLQEKVLSLKKKQRLANQSXSRQSTKSQASIKNYTXQELSTLFNNDHHKFFKFLNSFIFIEEDELTXNSXRIKINDKLQTNVNHFDNENICIVYVISRLEDDAAEHIFAQRQHDVSHSYISIDKLFKHLKEIYNELNRNXKCRCKYNALRQVDKSFNVFYFNFMKLFSYLDYDDCTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQSVNNKQRVNYQLRSQLRTVIVKVTVVPDKCIATSLLVMTSIIDYVKFIIFSIFESDRAKSSIICYICKTSRHLFKNCSQNKINTSASHAFISRLHEIVISKNKENEKMSSFEDSEAKN
Ga0272425_100043232	F000597	N/A	MKEMLISSTISMSDDSFASESLTTECVLSSNKISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIKSLTLIKLKSIRKFNDHYAKKLITHVIYLNLTVQSHTIDTVSMLITQLNQHQIILKKTXMNKINLVIDMQINFLXFSNFTSS
Ga0272425_100043234	F007840	N/A	MIDAIERQNNTRESIESTARLIELLDDLQLIKYASFISINKISDKESSLIARESNRSRESINLQIKQQKRLHLLLSSIALRSISFF
Ga0272425_100043235	F057010	N/A	MPRFFKERFEASFFIVEDNNLFAETITSSMTMKALKKRCEELKARLQAREITSSSSIYSEHSRSQKILDSSLFTDEKNSIXENXYEKVQNKLEINVDLFSSERVKLSYVHFRLFDDAAEITQSKRERDCFNSYKIVDELLKELAQLFDDSDKEVNFCRNYYNLIQEQKKFSEFYTQFQRLFFYLDYQEKQLIIDLKNKINSRLQFAXVTQLIQLSTLKEIHFYLIQLNNDQRAIQEIKNKEAMIKAQTTKQIIYAEESVKATRRIIEMKMTDQSKSRDAVLTNVKENDLLIENCFLCHKSDHTSKKCSNRSFRINALNDEFNHSLNFNSESDSKN
Ga0272425_10004328	F036994	N/A	MKSIIEADSLVDLLIEEIDYRLVIEADSLVACEREVDQFTDR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272425_1000432

Overview

Ecosystem & Geography

Associated Families

Sequences