Scaffold Ga0272425_1000429

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000429
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 89372
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (29.17%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008169	Metagenome	337	Y
F033266	Metagenome	177	Y
F036994	Metagenome	168	Y
F046102	Metagenome	151	Y
F083460	Metagenome	112	Y
F086375	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100042925	F036994	AGCAG	MXDRMIIEADSLVNLLIEEINYRLVLEADSLVAREREVNRFTDR
Ga0272425_100042932	F046102	GAGG	VTFIKDAMKDMLISSTMSSSNDLFASKSLTTECVLSSNEISYSLKSLIDTEAADYSFIDELIAQNVCDHLQIESLSLTKLKSIRKFDDHYAKKLITHAIYLNLTVQDHMKRFVFMLITRLDQHQMILEKTXMNKIEMTTDMRNDRLQFSSFEAHIKASTKAHSTVLSSKKIAIEQKSLIS
Ga0272425_100042937	F036994	AGCAG	MXNRMIIEADSLVDLLIEEVDYRLVIEAGSLVACEREIDRFTDR
Ga0272425_100042942	F008169	N/A	MPSHSLTEERFEEFQNRFSQTSDADSLKPRTKSPSAASFIHEDDESFAETIILLVFYEIXKARSLALDEETDRLYELDKQQEDEIKELKAKLQAKENTSSDFTYSERSRSQKIPDSSLFIDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYKIIDNLLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFSEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLRFIXVDQLVQPDFLKEIRFYLIHLNNDQRVIQEIKNKIKRVNDLSKTIFHRVTVVTQSVDHSKSD
Ga0272425_100042954	F036994	AGCAG	MXDRVIIEADSLVDLLIEEVDYRLALEAGSLVAREREVDRFTGR
Ga0272425_100042976	F086375	N/A	MFTLFINSKFITSRNRDENWFNEIKKHYKRQNNDHVALFKRLHKLKLFNVXKEANEIDKAVMKDNVRDKIEQEXKNKDIHDNASQ
Ga0272425_100042982	F033266	N/A	MSSHSFTEEHFEEFQNRFSQISDADSLKSRTKSSSAASFIHEDDESFIETIILFMFYEIXKTXSLALDEETDXLYKLNKQQEDEIKELKTKL
Ga0272425_100042991	F083460	GAG	MQLRMKSSDSQAYSDALLELNASSIKYAMRCXLHKLLNHHLNHEESQGNSENDDENEAAEAV