Scaffold Ga0272425_1000423

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000423
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90189
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (15.56%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F008115	Metagenome	338	Y
F008169	Metagenome	337	Y
F008668	Metagenome	329	Y
F010214	Metagenome	306	Y
F017941	Metagenome	237	Y
F036035	Metagenome	170	Y
F037509	Metagenome	167	Y
F070712	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100042323	F008668	N/A	MILFYFNKEFHSXMSFDSDTMNYETTHERLEARKADDIIILMKELLNFNHQQLKKTKLIIEVQINKHK
Ga0272425_100042326	F008169	N/A	MFSRSSIEERSEEFRNRFSQIFDADSSKSRTKSSSAASFIHEDDESFTETIIFLVFYEIXKTRSLALDEETDQLYELNKQQEDEIKELKTRLQAKENTSSDFIYFERSKSQKIPNSSLFTDEKNSTXKNXYGKIQNKLEINVNLFSNERVKLSYIHSRLFDDAAEIIQARRERDCVNLYRIINNLLKELAQLFNNSNKKVNFRREYYNLIQEFKKFSEFYTQFQRLSFYLNYHEKKLIADLKDKIHFHLQFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVDDLSKTIFHKATVVTQSVDHLKSDQLKLRDAILTNVKEADILVESCFVCHKSDHSSKECLDQSTRINAMNNEYDRFDFNSNFDSKN
Ga0272425_100042329	F005901	N/A	MNDKLQANVDHFDNENICIIYVISRLEDDAAEHIFAXRCHNVSHSYILIYELFEHLKEIYDELNRNQKCRREYNALKQADKSFNVFYFNFMKLFSYLDYDNCILMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQSVNNKQRVNYQLRSERRTVIVTVIIKVTIVSDKRVATLLSVMTSIIDYVKSIIFFISESARSSIICYTCKTLNHLFKNCSQNKIDILTSCAFTSHLHEIIISKNKKNEKMSSFEDSETKN
Ga0272425_100042332	F008115	N/A	MNFITELSLSEDYNVICTIICXLIKKRHYVFCHXKDESISVEETVXIMLXNVYXLHDLLSFIVSNRDFQFISTMXQSLCKRLRITTSLSTVYHFEINDQSEXVNQDIERELRIYCNYMQNDXAKXLSMMKFSENFNIFFVISMISFYFNKDFHSRMSFDSDTTDYEITRERLEARKVDDIIIXMKKLLIFDRQQLKKTKQITEDQINKHRXNVIYKINYXVXLSFRNVKTTRSCKDLKDKQLELYQIMIKVEIFYHLHLSISMKQLHSMFSLKLLRSYFDDLLSEQHSESLKSLTIKNDEHXKINDILNFRRYRDRIQYKIKXTRLNQDNKXYYVNKEEFKNLKEVLVKFHKLYSDKSH
Ga0272425_100042336	F037509	N/A	MILISLLIQVHSIDNEMSIKKFVYLMINDIERQNNIKKSIKSMKIYDHXIARESIAQSVASVQID
Ga0272425_100042343	F010214	N/A	MXCLSKLLMKVSVLFNYDTSSLLCSSLTIFYTMMSXFDLQFEDERRFLCTRDVHDCNVCRVVFFYSMIIIHXAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVDVEXIVSINVQSQSFDVXLXSMKENAFXSFSXALNFSCK
Ga0272425_100042359	F017941	N/A	MKIVDLKKNISELIYKQILKINEIDENCMLLRETIARDET
Ga0272425_100042373	F036035	N/A	MKDKMKDDAMXKEHHELEKASRNHKRDNSNHSNDILNKHTESISDCDVIKESDEREKK
Ga0272425_100042382	F008115	N/A	MNFITELFLSEDYNIICTIICXLIKKHYYVFCHXEDESISVEETVXIMLXNVYXLHDLLSFIVSNRDSQFISTMXQSICKQLRITTSLSTVYHFEIDDQSKXVNQDIEHELRIYCNYMQNDXAKXLSMMKFSENFNIFLIISMISFYFNKEFHSXMSFNSDTTDYKTTCKHLEVRKVNNIVIQIKKLLIFDHQQLKKTKQIIEAQINKHRRDIIYEVNDXVXLFFRNVKTTRSCKDLKDKQLELYQIMIKVEIFYHLHLSISMKQLHSMFSSKLLHSYFNNFLSEQHSESFKLLTIEDNEHXKINDILNFKHYRDXIQYKIKXTRLD
Ga0272425_100042385	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKRDSLNLYRKIEVTTLVDHSKLRDATLTSVKETNLQTESCFIYHKSDHFFKECSDXISRINALENDEFDQSALNFESNSDSKN