Scaffold Ga0272425_1000394

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000394
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93134
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (47.75%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F006206	Metagenome	378	Y
F018839	Metagenome	232	Y
F025887	Metagenome	199	Y
F044226	Metagenome	154	Y
F061401	Metagenome	131	Y
F061402	Metagenome	131	Y
F081945	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100039412	F001253	GAG	VTFIKDVMKDVLISSTMSSSNDFFASKSLTIECVLSSNEISYSLKSLIDIEAADYSFIDELIAQNVYDHLKIESLSLIKLKSIRKFDDHYAKKLIIYAIYLNLTVQDHMKHFASMLIIQLDQHQMILEKT
Ga0272425_100039414	F018839	N/A	MMIAKVVIFDRLTSDLYAAVSIIAMFIELKDEAKLTELDDFTILLNEDC
Ga0272425_100039422	F025887	N/A	MSDDSFDFKSFIVDIILNNLEKIFRFLALINIEVIDMTFIDESLMSKLCECFDIQSILLLKSKLI
Ga0272425_100039423	F081945	N/A	MPSHSSTEERSEEFRNRFSQISDADLTKSSSAASFIHEDDESFAETVILLVFYEI
Ga0272425_100039425	F061401	N/A	LNNDQQVIQEIKNKIKRVNDVSKTIFYKLTVITQQSFNHSKSDHLKSRDAILTNVKEANILFKSCFIYHKSDHSFKKCLDRSTRINAVNNKYDRFSFNSNFDSKN
Ga0272425_10003943	F006206	GAG	LCNQVEVLLKENYFEKFFLINASLISQSNSFSLCSLINSDFVIYMLIHDKLVNKVCKKLEIQFISLAKEKLIQEYDEKLFKKTITHKILLNLTIESHKKLTVSMLIVDINHHEAILSKL
Ga0272425_100039431	F044226	GAG	MMKFSNNSNIFSITSMIFFYFNKEFHSRMSFNSDTTDYKTTHEQLEVRKANDIVIQMKKLLNFDH
Ga0272425_100039433	F006206	GAG	LCSQIEVLLKENYFEKSFLINASLISQRNSFSLHSLIDSDFVVYTLIHDKLVNKICQKLEIQFISLAKEKLIRDYDEKLARKTITHNILLNLTIESHKKLTISMLIADIEHHEAILSKF
Ga0272425_100039437	F044226	GAG	MMKFSENFNIFLIISMTSFYFNKSFRFQMSFDSDMTDYKTIHERLEAKKANNIAI
Ga0272425_10003949	F061402	N/A	MTEFINNNAISSLIEHSAFFLNKNFHFHMSFDSNSTEYEITQARIEVSKAKNIFEHMK