Scaffold Ga0272425_1000387

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000387
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93513
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (45.74%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F013598	Metagenome	269	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100038777	F000597	N/A	MKDVLISSMMSMSDDSFASESLTTECVLSSNEISYLLKSLIDIKAADYSFINEVIAQIVCDQLQIKSLTLIKVKSIRKFDDHYTKKLITHVIYLNLTVQDHTIDTASMLIT
Ga0272425_100038781	F013598	N/A	MNFIIDLFDSSEYNAILTIICRLSKERHYISCIIDDEDITVEKTAEMLTQ
Ga0272425_100038789	F044226	GAG	MMKFSDNSNIFSITSMILFYFNKKFHSRMSFDSDTTDYETTHERLEARKANDIVIQMKELLSFNR