Scaffold Ga0272425_1000384

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000384
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93898
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (34.38%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F005901	Metagenome	386	Y
F036035	Metagenome	170	Y
F037509	Metagenome	167	Y
F041516	Metagenome	159	Y
F044227	Metagenome	154	Y
F055318	Metagenome	138	Y
F070712	Metagenome	122	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100038414	F005901	AGAAG	MNDKLIVNADQFNDEIIYIIYMMSRLENDVAKYIFAXRCFNSSNSFTLIYKLFDHLKEIYNELNKNRKSXREYNALRQADKSFNVFYFNFMKLFSYLDYDDCILMNNLQNKINNRLQNTLSVCSKNFTSLTRLRIFLQSVNNKQQVNYQLRSERCTVIIKVTVVSNKCAATSLSVTTLIIDYIKSIIFSIFESARSFIICYTCKISSHLSKNCSQNKINTFAF
Ga0272425_100038419	F002432	N/A	MQNDXAKXLFMMKFSENFNIFLIISMTLFYFNKNFHSRMSFDSDTTDYETIHERLEAKKADDIIIXMKELLIFNHQQLKKTKQIIKAQINKHKXDVIYEVDDXVXLFSRNIKIIKSCKDLKDKQLELYQITIKVEIFYHLHLSISMKQLHSMFSSKLLRSYS
Ga0272425_100038422	F070712	GAG	MNDIKEKKFLIKVRKQVIFAEKXDSLNLYRKIEVTTLVDHSKSRNAILTNVKDIDLQAEICFTCHKSDHTSKECFNXSKVNALKDNEFD
Ga0272425_100038424	F037509	N/A	MILISLLIQIHLTDNKMSIKKFMYLIINNIERQNNIKKSIESTRIYDHVIARESIAQSVASVQID
Ga0272425_100038428	F044227	N/A	MQLQMKSLNNEACTHALLELIAFAIKNATRCXLLELLNNHHHHEKSQSSSEDDDENEALEAI
Ga0272425_100038442	F041516	N/A	MIQKAIHIHEAYNSSFKDHKIIHEKENLSDIKKMLYMSKESIFVKDFNLHHFT
Ga0272425_100038445	F055318	N/A	MLRDDEALCVDCMQSFRDRADFNNLNAHATSNLHADEKVK
Ga0272425_100038451	F102180	GAG	LKESTLIITHHDELKKLVAKAKHLADVAIMNQEYHEKIYKVYSNNQTSLKTVKAMISTKNQTRLQQV
Ga0272425_100038452	F036035	N/A	MKDRMKDDAMQRKHHELEKVSRNHECDNSNHLNDTLDKHTELISDCDVIKESDERKRR
Ga0272425_10003847	F036035	N/A	MKDRMKDNAMQREHHELEKASRNHERDNSNHSNDTFNKHIESISDCNIIKESDEREKE