Scaffold Ga0272425_1000375

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000375
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 94999
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (38.20%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (23.08%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F005901	Metagenome	386	Y
F006206	Metagenome	378	Y
F008668	Metagenome	329	Y
F013598	Metagenome	269	Y
F017941	Metagenome	237	Y
F036036	Metagenome	170	Y
F037508	Metagenome	167	Y
F037509	Metagenome	167	Y
F044226	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100037510	F000597	GAG	VTFIKDVMKDVLISSMTSMLNDSFASESLITECVLSSNEISYSLKSLINIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDNHYAKKLITHVIYLNLTVQDHTIDTASMLITRLNQHQMILEKT
Ga0272425_100037511	F037508	N/A	VIFRLEDDADQQIYAKHHVDAFSLYQSLSELLKHLKEIYEDQNLIRKCCREYVALKQLNKLFSSFYSKFTRIFSFLNYDKIILMNNIQNKINNHLQNVLSVCLIEFSLLDKLKIFLQDVNNKQRVNYQLRDEQ
Ga0272425_100037515	F044226	GAG	MIKFSENFNIFSIISMTSFYFNKSFHSQISFDSDTTNYETTHEHLEARKADDIII
Ga0272425_100037517	F006206	N/A	LKENYFEKSFLINASFISQSNSFSLRSLIDSDFVVYMLIHDKLVNKICQKLEIQFISLAKKKLIRDYNEKLVRKTITHKILLNLTIESYKKLTVSMLIADIEHHEAILSKL
Ga0272425_100037519	F005901	N/A	MNDKLQANVDHFDNENICIVYVISRLKDDAAEHIFIQRCHDASHSYILIYKLFEHLKEIYNELNRNQKCCRKYNTLRQTNKLFNVFYFNFMKLFSYLDYDDRILMNDLQNKINNHLQNALSVCFKDFTSLHHLKTFLQDVNNKQRVNYQLRSQLCTVTVKVIVVSDKCIATSLSVMTLIINYVKSTLSSTSESAKLFIICYTCKISSHLFKNCSQNKINTFASHAFTSHLHEIVISKNKKNEKMSSFEDNEAKN
Ga0272425_10003752	F008668	GAG	MVKFSDNFNTFSIISMISFYFNKEFHPRMSFDSDTTDYETTRERLEARKADDIVIRMKELLSFDRQQLKKTKLIIEVQVNKHRRNVIYEVDD
Ga0272425_100037520	F000597	N/A	MSDDSFASESLTIECVLSSNEISYSLKSLINIEAADYSFIDEVTAQIVCDQLQIKLLTLIKAKSIQEFNDHYAKKLITHVIYLNLTVQDHTIDTAFMLITQLDQHQMILEKT
Ga0272425_100037523	F036036	N/A	MLISLIHHLFSCFDQSFASEDQYLIHVIEYIFDSNDLQTFANAFILDDVEIKAHTRVKAFVHEEESQEDD
Ga0272425_100037527	F037509	N/A	MILIFIFIQINSTDNETSIKKFVYLMINDIKRQNNIKKSIESMKKYNHVIARESIAQSVTSVQID
Ga0272425_10003753	F036036	N/A	MLVSLIHHLFSCFDQSFTSEDQCLVHLLRYILDSIDLQAFASAFILNDFRVEAHTRVKALVHEEEDQ
Ga0272425_10003755	F013598	N/A	MNFIINLFVSSEYNAILTIICRLSKERHYISCIIDDEDITVKKTAEMLIQ
Ga0272425_100037550	F000597	N/A	MSDDSFTSESLTTECILSSNEISYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIREFDDHYVKKLITHVIYLNLTV
Ga0272425_10003756	F017941	N/A	MKIVDLKKNINESIYKQILETNEIDENCMLLREVIARDETQYEDIKLKNC