Scaffold Ga0272425_1000318

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000318
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 103239
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (22.55%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F007840	Metagenome	343	Y
F011463	Metagenome	290	Y
F024448	Metagenome	205	Y
F028667	Metagenome	190	Y
F033266	Metagenome	177	Y
F036504	Metagenome	169	Y
F036994	Metagenome	168	Y
F065268	Metagenome	127	Y
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000318102	F033266	N/A	MPSCSLTEERFEEFRNRFSQISDADSSKSRTKSPSAASFIHEDDESFAETIILFVFYEIXKAXSLALDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIP
Ga0272425_100031815	F036994	AGCAG	MXNRMIIEAGSLVDLLIEEIDYRLVIEAGSLVAREREIDRFTDR
Ga0272425_100031816	F000597	N/A	MKDVLISLMMSMSNNSFTSESLIIEYVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIICDQLQIELLTLIKAKSIQEFNDHYAKKLITHVIYLNLMIQDHMIDIAFMLITQLNQH
Ga0272425_100031821	F024448	GAGG	VTFIKDVMKDVLISSTTSMSDDFFASESLTTECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYSNLTVQDHMIDTASMLITRLDQHQIILEKTXMNKINLVIDMQIDSLQFSDFTSS
Ga0272425_100031822	F036504	N/A	VIFRLEDNADQQIYAKCRVDAFSFYQSLSELLKHLKEIYEDQNLIRKCRCKYVALKQLNKLFSSFYSKFTRIFSFLNYEDVTLMNNIQNKINNHLQNALSVCLIEFSSLDKLKIFLQDVNNKQRVNYQLRDEQXTVKLIAASKKRFVSSLTSASTTSYVQFATFSILEPEXSRMSIICFNCKASSHLSKNCSQLKTSTLTSHAFISRLNEIIMSKEEKKLFTEKLKNEAKN
Ga0272425_100031830	F028667	GAG	MTLKLNEQXINVQVNHIKRLDKLKANQTTIDTQEKTIIELREKVLSLKKKQRSANQSRSRQSMKSRASIENYTRQESFTLFDNDHHKFFKFSNSSVFIDEDESTXNSXRIKMNDKLQTNVDHFDNENICIVYVISKLKDDAAEHIFAXRRHDASHSYTLIDELFEHLKEIYDELNRNRKCRRKYNALRQADKSFNVFYFNFMKLFSYLEYDDCTLMNDLQNKINNRLQNILSVCSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTIVSDKRVATSLSVTTLIINYVKSIIFSTSESDXAKSSIICYICKISKHLFKNCSQNKINTSAFHAFISRLHEIVISKNKENEKMSSFKDSETKN
Ga0272425_100031845	F007840	N/A	MIDAIERQNNTRESIESTARLVELLDDLQLIKYASFISINRISDKEPSLIARESNRSRESINSQIKQQKXLHLLLSSITLRSISFF
Ga0272425_100031852	F028667	N/A	MSQQLRQXTIDQSDEIIKMLIELRNQRDMTLKLNEQXIVVQVEHDKRLNQLKIKQMIINTLEETNKRYREKMLNLKNKLKEVLHSANQSQSRQSTKSLPRQSIENHTRRKSFTLFNNDHHKSFKFLNSFVFIDEDESTXNSXRIKMNDKLQTNVDHFNNENTCIVYVISKLKGNAAEHIFAXRRHDASHSYTLIDELFEHLKEIYDELNRNRKCCREYNALRQADKSFNVFYFNFMKLFSYLNYDDRILMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNNKQRVNYQLRSQLRTVIVKVTVVPDKRAAISLSVTTSIIDYVKSILSFISESARLSIICYICKTLDHLFKNCSQNKINTSASCAFISCLHEIVISKNKKNEKMSSFKNSEAKN
Ga0272425_100031856	F033266	N/A	MPSRSLTEEHFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETVILLMFYEIXKARSLALDEETNRLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXKN
Ga0272425_100031870	F074203	N/A	MSKCLSIEERFEEFRSCFSQISETDSSKFSSAESFINEDNKSFAETVILSVFIENXKTQCMILDRETDRLNELSKQRDDKIKELKTRLQTKEITSSDFIYSERSRFQKIPDSFXFTDEKNSTXKNXYDKIQNKLEINVDLFSNERVKLSYVHFRLFNDAADVTQFRRECDCVNFYKIINDLLKELAELFNDSDKKVNFCRKYYNLIQESKKFSEFYTQFQQLLRVCXNXIEFPSQQALEVLAHVEPLASTLYSSAFDTQANLLRSLCFALL
Ga0272425_100031876	F011463	N/A	MSFNSDTTDYEITHEXLKARKADDIVIQMKELLSFNHQQLKKMKLIIEAQINKHRRDVIYEIDDXVXLFFRNVKITRSCKDLKDKQLKLYQITVKARVFYHLHLSVSMKHLHSMFSLKLLXSYSEDFLSEQHAESLRLIIIDDNNDEHXEINDILNFRCYRDXIQYKIKXKDLDKDDEXYYVNKDEFNDFKKVLNEFHTLYSRKSR
Ga0272425_100031885	F065268	N/A	MIRSTESESVSIARYDFQNVRKKSLLSQNQTASEEENTNASSNTEEKNTNALLFNHKIIKISISTELNAXISVHEANDIIIFIKYIC