Scaffold Ga0272425_1000297

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000297
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 107193
• Total Scaffold Genes: 102
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (21.57%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006206	Metagenome	378	Y
F008169	Metagenome	337	Y
F009377	Metagenome	318	Y
F036035	Metagenome	170	Y
F083460	Metagenome	112	Y
F094622	Metagenome	105	Y
F100079	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100029732	F009377	N/A	MTRSSESASIARYDLXNARRELLLSQNXTASEEEDMNVSSDTEEKNTNALLFDHEMIKISISTELNAXISTHEADDIVVFIKYICQQHNIEIEIHNDMIQMLEDVNKINITLKIMQTRLQKENRNKNVIIHHLKAASSRQSTLISEDXSSKLIKLLDSSLFKDSSQNVNNXLSRMQNKLKINKNHFSIEELKIVYIKSXVNEAAIKHIASXIRNTSLNFFLEVEEVLLIINKMYDNLNHHYTTQRQYLKLY
Ga0272425_100029753	F036035	N/A	MKDKMKDDAMQREHYELEKASRNHECDNSNHSNNTLDKHTELISDCDVIEESNERKRK
Ga0272425_100029758	F036035	N/A	MKDRIKDDAMQREHYELKKASRNHEHDDSNHSNDTFNKHTESISDCDIIKESNERKRK
Ga0272425_100029763	F083460	N/A	MQLRMKSSDSQAYSDALLELNVSSIKYAMRHXLHELLNHCLNHEESQDNNENDDENKAAEAV
Ga0272425_100029771	F036035	N/A	MKDNAMQRKHHELKKASRNHERDDSDHLNDTFNKHTESISDCDIIEQSDERERK
Ga0272425_100029783	F094622	N/A	MFTLKQRVYLNDSDSKDDVTVIMMKINXELNKRLRESTLIITHHDELKELVAKMKHFTNVVTVNQECHEKIYKVCSDNQTSLKTMKAMISIKD
Ga0272425_100029785	F036035	N/A	MKDDAMQREHHELEKASRNHERDDSNHLNDTFNKHTKLISDCDIIEESDERKRK
Ga0272425_100029789	F006206	GAG	LYNLDKISSEENYFKKLFLINAVLISQSKSFNLXSLINSDFVVYILIHTKLVNKVCKKLKIQFISLTKEKLIXDYDEKLFKKVITYKILLNLTIKSHKKLIMSMLIVNIEHHEAILSKLXMNKNEILLNM
Ga0272425_100029791	F100079	N/A	MFRHRHSIYKQYADEKTLLKEERHKRVSKEXLNYAIXLKV
Ga0272425_100029797	F008169	GAG	LKLSSAESFINEDDESFAETVILSVSIENXKAXCMTLDRETDQLNELSKQRDNEIKELKTRLQTKEITSSDFIYFERSRFQKIPDSFXFTDEKNSTWENXYDKIQNKLEINVDLFSNKRVKLSYVHFRLFDDAADVAQSRRERDCVNLYKIIDDLLKELTELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLKYYEKQLIIDLKDKINSRLRFIXIDQLVQPDFLKEIHFYLIHLNNDQRVIQEIKNKVNLIKRVNDLSKIIFHKAVVTQSVDHSKSDHLKSCNAILTSVKKADVLVETCFICHKSDHSSRECSDRPTRINAVNNEYDHFKFNFDSNFDSKN