Scaffold Ga0272425_1000280

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000280
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109935
• Total Scaffold Genes: 124
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 50 (40.32%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F004755	Metagenome	424	Y
F009580	Metagenome	315	Y
F021452	Metagenome	218	Y
F028667	Metagenome	190	Y
F065268	Metagenome	127	Y
F089602	Metagenome	108	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100028019	F065268	N/A	MTRSSESASIAYYDLQNARRESLLSQNXTASEEENMNVLSDTEEKNMNTLLFNHEMIKISISTELNAXISTYEANDIVVFIKYICQQHDIEIKIYNDMI
Ga0272425_100028021	F004755	N/A	LKELAQLFDDSNKKVNFRRKYYNLIQEFKKFSEFYTRFQRLSFYLDYHEKQLIADLKDKIHFRLRFVXVDQLVQSDSLKEIRFYLIHLNNDQQVIXKIKNKIKRVNDLSKTIFHRATVVTQSVDHLKSDQLKSRDAILTNVKEADILVESCFIYHKSGHSSKECFNRSTRINAVNNEYDHFDFDSNFDSKN
Ga0272425_100028027	F021452	N/A	MFNDLFDFKSFTVDIILSSLEEIFRFLALINTEVTDMTFINKFLMSKLCEHFDIQSISLLKXKLIQSYDEISDQKLITHALYTLIMIQEYKNEMMFLLITCLN
Ga0272425_100028035	F000597	N/A	MKKMLISSTTSMSNDSFASESLTTKCVLSSNEINYSLKSLIDIEAADYSFIDEVITQIVCDQLQIESLTLIKAKSIREFDDHYAKKLITHAIYLNLTV
Ga0272425_100028055	F009580	GAG	MICIQISEHDLAQKLNFSYEQRDFFIYTDDVIVVNVHDMQSEKLFIXAFFNDFAXMLQLAVVAQLSLVADFLDFRNDQNLILNDDNDEA
Ga0272425_100028056	F001951	N/A	MKLKFIDSSRNKKERDEDIVKTTVTEMMIFEFKELLVDAKILLTLMNETIMKMK
Ga0272425_100028057	F089602	N/A	MKDEXLNFIEISSEEDNDLNEIINITLQTVNQXEIFHQRTFFLLIEEIVVVNKVIHVLLQSFIKI
Ga0272425_100028058	F102181	N/A	MKEIMIIIHVHALYQILLSCIQLIFVLLIFKYVKKLLEFRSNENNDRIRKEMNDEERLIVQDLCDNLSYHHEKLRI
Ga0272425_100028061	F028667	N/A	MTRDSESVESRTAHLLKSTVNKXVFLISFDASARSQNVVISXNINMSQQLRQXAIDQLDEIIKMLIKLRDQXDMTLKLNEQXIDVQVDYIKRLNELKINQMTIDTQEETIIELQEKVLSLKKKQRSANQSRSRQSTESRVSTKSLSRQSIKNHTXRESFTLFNNDHHKSFKFLNSSVFIDENESTXDSXRVKMNDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXRRHDASHSYILIYELFEHLKEIYDELNRNRKCRRKYNALRQTDKLFNIFYFNFMKLFSYLDYDDHTLMNDLQNKINNRLQNALSVCFEDFASLHRLKIFLQDVNNKQRVNYQLRSQLHIVTVKVTVVSDKRAATSLSMTTLIINYVKSTLSFISESARLSIICYTCKISSHLFKNYSQNKVDTSASCTFILRLHEIIILKNKKNEKMSSFEDSEAKN