Scaffold Ga0272425_1000256

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000256
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113748
• Total Scaffold Genes: 158
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 82 (51.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008668	Metagenome	329	Y
F037508	Metagenome	167	Y
F059497	Metagenome	133	Y
F084912	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100025618	F037508	N/A	VISRLEGDADQQTYAKRRVDAPSPYQSLSELLKHLEGIYEDQDLIRKCRREYVALKQLNKPFSSFYSEFTRIFSFLNYDDTTLMNDIQDKINNRLQNALSVCLIEFSSLDKLKTFLQDVNNKQRVNYQLRGEQRTVKAHGREGIPPPSASLAQPR
Ga0272425_100025643	F008668	GAG	MMKFSDNFNTFSTISMISFYFNKDFHLRMSFDSDTTDYETTRQRIEARKIDDIVIQMSELLTFDCQQLKKIKQVTEAQMNKHRRDVIYEVGDQV
Ga0272425_100025645	F059497	GAGG	MSIKDIDRKIVYNTQCKLNVLNVAFIDASAQNLEDIKVKLSLKYQNFIDVFDRAQVNKLSSHRSYDHKIELTNDVTSSRCQAY
Ga0272425_100025648	F084912	N/A	MTDQSKSHDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFNHSLNFNSESDSKN