Scaffold Ga0272425_1000245

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000245
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115599
• Total Scaffold Genes: 119
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (21.85%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F007840	Metagenome	343	Y
F017767	Metagenome	238	Y
F020121	Metagenome	225	Y
F021026	Metagenome	220	Y
F024448	Metagenome	205	Y
F036035	Metagenome	170	Y
F055318	Metagenome	138	Y
F057010	Metagenome	136	N
F064252	Metagenome	128	Y
F102180	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000245104	F020121	GAG	MKKLTEHLHDEMLITQIIYEFNVNLFHRSCSKYFVEDKIXLNACNLSIARLVVKSNDCNIDFFKIKHVFKNNSLIIELNLSAFMKIHSIFHVILLSYITSDFLLSQHQKSQELIIIKNDERFXYVNSILNFQHDKCYNSSLLKYYIDXKDHFST
Ga0272425_1000245116	F021026	N/A	MIVFCILRQAQFKVLTLALIDSKVSAYIFMNKFFAQQHYLFLHQLIHSYRLQEFNDQVALIDDITHVVEITIILDEHIEKLFFYIIELSQYLIIMSLSXLHHHVIDVNFEHNILILSFFFCLNHYCSFLIKIYDLN
Ga0272425_100024522	F057010	N/A	MSRLFKERFEASFFIVEDNDSFAETITSSMTMKALKKRCEELKARLQAKKIISSSSIYSERSRSQKIPDSSLFTDEKNSIXKNWYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIIDELLKELAQLFDDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQRLFFYLNYQEKQLIIDLKNKINSRLRFAXVTQLIQLSTLKEIRFYLIQLNNDQRAIQEIKNREAMIKAXTTKQVIYAEKSVKATRRIIEMKMTDQSKPRDAVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALNDEFDHSSNFDSESDSKN
Ga0272425_100024523	F007840	N/A	MINAIERQNNTRRFIKSTARLIELLDDLQLIKYASFISINRISDKEPSLIARESNRSRESINLQIKQQKRLHLLLLSIALHSISFF
Ga0272425_100024563	F005901	AGAAG	MNDKLIVNVNQFNNETICIIYMMFKLKNDAAKHIFAXRHFNSLNLIILIYELFNHLKEIYDELNKNRKSXRKYNALRQADKFFNVFYFDFMKLFSYLDYNDHILINDLQNKINNHLQNALSVCSENFTSLFRLKKFLQDVNNKQXVNYQLCSERCTVIVKVTVVFNKCATSLLVITLIIDYVKSTIFSIFKSARLFIICYICKISSHLFKNYSQNKIDILTS
Ga0272425_100024564	F024448	GAGG	VTFIKDAMKDVLISSTMSMSDDSFASESLTTECVLSSNEISYSLKSLIDTEAADYSFIDEVIVQIVYDQLQIKLLTLIKAKSIQEFNDYYAKKLITHVIYSNLTIQDHTVNIAFILITQLEQHQIILEKTXINKTDLIIDMQIDSLQFSNFNSRLTILFLSERMTLKQKSLTFTHILKRFFTSVTSQSSQKSFSFS
Ga0272425_100024568	F055318	N/A	MLRDDEALYIDHMQSFRDRANFDNLNAYVTSNLHADEKVK
Ga0272425_100024576	F102180	N/A	MKMNXELNKRLKESTLVITHYEKLKELVAKTKHFADVATANQECHEKIYKVYNDSQTSLKTVKAMISTKDQTRLQXIQIAHESIXS
Ga0272425_100024578	F036035	N/A	MKDRMKDNAMQREHHELEKASRNHECDDNNHLNDTLDKHIESISDCDIIKESDEREKK
Ga0272425_100024589	F017767	N/A	MKNVLISSITSMSNDSFASESLTTECVLSNNEINYSLKSLIDIEAADYSFIDEVIAQIVC
Ga0272425_100024590	F064252	GAG	VNQSQSXQSTKSXTSIKNYTXRKSSTLFDNDHHKSFKFLNSSVFIDEDESTXDSXRVKMNDKLQTNVNHFDNENICIVYVISRLENDAAEHIFAXRRHDALHSYISINELFEHLKEIYDELNRNRKCRCEYNALKQADKSFNVFYFNFMKLFSYLNYDNCIVMNDLQNKINNRLQNALSVCSKNFTSLIRLRIFLQSVNNKQRVNYQLRSERHTVIVTIIIKVMIVSDKRTATSLSVTTSIIDYIKSIIFSTSKSARSFIICYTCKVSSHLLKNCSQNKINISAS