NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000236

Scaffold Ga0272425_1000236


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000236 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116565
Total Scaffold Genes121 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (56.20%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F008668Metagenome329Y
F048685Metagenome147Y
F058565Metagenome134Y
F061401Metagenome131Y
F081945Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_1000236110F058565N/AMTMNCMNCSNADSKMIASNVDSLQENKDARLKCSCDDEENVANIIDLLIKISTLEKEKSKDHS
Ga0272425_100023685F061401N/ALNNDQRVIQEIKNKIKRVNDLSKTIFHKVTIVTQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSDHSFKECLNQSTRINTVNKKYNRFNFDSNFDSKN
Ga0272425_100023687F081945N/AMFNRSSTEECFKEFRNRFSQISDADSLKSRTKSSSAASFIHEDDESFTEMIISLMFYEI
Ga0272425_100023690F000597N/AMSDDSFASEPLIIECVLSSNEISYSLKSLIDIEAADYSFIDEVIAQIVCDQLQIELLTLIKAKSIQEFDDHYAKRLITHAIYLNLTV
Ga0272425_100023693F048685N/AMYRSGKQNIKVDALTRQADFVPRGFDDERVQYQRTTILTLNQMKIADLEKNNDQSIYKQVLETNEIDENCTLLREAIARDEAQYEGIKLKNCRTQDEILYHDSQL
Ga0272425_100023696F008668N/AMTFFYFNKSFHLRMSFDSDTTDYETTCEHLEARKADDIIIQMKELLIFDCQQLKKTKQITEAQVNKHR
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