Scaffold Ga0272425_1000190

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000190
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 126431
• Total Scaffold Genes: 121
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (23.97%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F002432	Metagenome	559	Y
F009580	Metagenome	315	Y
F023763	Metagenome	208	Y
F028667	Metagenome	190	Y
F033265	Metagenome	177	Y
F036994	Metagenome	168	Y
F057011	Metagenome	136	Y
F064254	Metagenome	128	Y
F086377	Metagenome	110	Y
F087978	Metagenome	109	Y
F102181	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100019023	F023763	N/A	MIQLLNXHKILKIFVIHDYLNKIDRIFKFXSSFLENINNDHEFFIVDLVVTLDXIMLLXKVSDXMKNLVLIVLKENVFKYIVQSINFYHNLVIXIIMMKNNFESEDFLKNVECNLTFLKSDKEYIFSNEMSERSSYFTIIIDESFIKVCEI
Ga0272425_100019024	F086377	N/A	MIQHFXNQKQRISILDCDSVQILIVHAEAKFFFEFLDEENKDDHLKATDLNKIFAQIFIQITTKF
Ga0272425_100019030	F057011	N/A	VLXLIESQCIRRXXVXSIYIELXVXFXFKKLAISFRIIEEIEIIFLCSQIEILLKENYFEKSFLINASLISQSNSFSLHSLIDSNFVVYMLIHDKLVNKVCQKLEIQSILLAKEKLIXDHDEKLVRKTITHKILLNLIIESHKKLTMSMLIIDIKHHKAILSKLXMNKNEILLNMRHNTIVFPDQLNISISIFLISSNTKHSSXLQSTSTSLTAHSKIFKILKHSVSFIQKKSFSI
Ga0272425_100019035	F002432	N/A	MQNDXVKXLFMMKFSENFNIFSIISMTSFYFNKNFHSXMSFDSDTTDYKTTCERSEARKANNVIIQMKELLIFDHQQLKKTKQIIKAQINKHRXNIIYEVDDXVXLFFRNIKTTKSCKDLKDKQLKLYQITVKVEIFYHFHLSISMKQLHSMFSSKLLHSYS
Ga0272425_100019037	F064254	N/A	MQELYELVSFLLSLSFIXFFDDIMIXNXFSMLVESIIQMIIVITLMISRSFLKFMMFSLHCIIFHSIFHLEHVNKMCLINIQSLSHLHIIVATSSTRLSCRNXLKSIFLIRNCISNALXDFAQFLCSCRCQCVISDVRYXKXAALNFSFQTTLHVYLIYFCMSISLVITSVHXCSVSNRDKLCMLLIILFIASFSSTSACFVT
Ga0272425_100019041	F036994	AGCAG	MXDRVIIEADSLVDLLIEEIDYRLALEADSLVAREREVDRFTDR
Ga0272425_100019042	F028667	N/A	MLNELKSQRDMTLKLNEQXIVVQVEHDKRLNQLEIKQMIIDTLEETNKCYQEKMLNLKNKLKEVLHSANQSRSCQSTESRVSTKSLSCQFIENHTXRESFTLFNNDHHKSFKFSNSSVFIDKDESTXNSXRIKIDNKLQTNVNHFINETICIVYVISRLEDDVAEHIFAXRHHDILHSYISIYELFEHLKEIYDELNRNRKCRCKYNALRQADKSFNVFYFDFMKLFSYLDYDNCILINDLQNKINNRLQNALSVCSKNFTSLTHLRIFLQDVNNKQRVNYQLRSQLRTVIVKVIVVPDKCAATSLSVMTLIIDYVKFIISFTSESARSSIICYTCKISSHLFKNCSQNKIDTSASCVFISCLHEITILKNKENEKMSSSSENSEAKN
Ga0272425_100019057	F036994	N/A	MXDRMIIEADSLVDLLIKEINYRLVLEADSLVAREREIDRFTDR
Ga0272425_100019058	F102181	N/A	MKEIVIIIYIHALYQTLLSDIQLIFVSFIFKYVKKLFEFNESQDSNKVCKDLNDEERLIMQNLCDDLSYLLRSCLESNHTAAR
Ga0272425_100019060	F001951	N/A	MIIIKFKFIDLSRNEKERDEDTVETTVTEMMIFEFKELLVNAKMLLTLMNEMMTKMKRD
Ga0272425_100019061	F009580	AGCAG	MIEVRMKRLRLVDKMICIQISERDLVQRLNFFCKQXDFFIYTDDIIVINVHDIQSEKLFIXAFFSDFAQILQFAVVAQLSLIADFLDLRNDQSLILNNDNNKV
Ga0272425_100019063	F086377	N/A	MIQHFXNQKQRISILDCDNIQILIIHTEAKFFFEFLNEENRNDHLRVIDLNKIFAQILIQITTKF
Ga0272425_100019067	F023763	N/A	MLILMSRIKCISLFKEIFXTKCQSIQLIVNLVKIISNVIVEFKQKFASTSLTTTQLFNXHEILKIFMIRDHLNKVDKIFKLXSSFLESMNNDHEFFIVNVIVTLNXVMLLXKVSDXIKNFILIILKKNVFEHIVXSIDFYHNLVIXIIVTKNNLESKDFLKNVECNLTFLKSDKEYIFSDETSKXDSYSTIVIDESSIEVRKI
Ga0272425_10001907	F087978	N/A	MFSLKLLQSYSEDFLSEQHAELLRLIIIDDDDDEHXKIDDILNFRCYRGXIQYKIKXKDLNKDDEXYYVDKDEFNDFEKVLNEFHTLYSRKSR
Ga0272425_10001908	F033265	N/A	MFSVIKKTMTSQLKKQFESCYETSIDCMIYSVLLFQTETFNSYQLCERVFASDXESQLVYSQSIIXRSTIRRNKSIKTLNANLEFTAITCRTTESNEYLXXNSATISISSXSSQXSLSTSIKIFTLEXVSIQIQLTMKSLMNDXKLEKQMILSFKXKSYXALIINNXKRXSXLLKHRSINIDETSSMR