Scaffold Ga0272425_1000186

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000186
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 128328
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (25.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051591	Metagenome	143	Y
F055318	Metagenome	138	Y
F061400	Metagenome	131	Y
F061402	Metagenome	131	Y
F065269	Metagenome	127	Y
F083460	Metagenome	112	Y
F086376	Metagenome	110	Y
F091080	Metagenome	107	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000186101	F051591	N/A	MLDAITLYLMYXSSCIISLRIVTTDLDLLSCTSRKDKTDSDLIRNAVLLXNNVVLCAIFEHKRVXFQFLHQYAVFCAVLKLIDDLFFLCEFALRFINQITIXIDDSFFCVDEFSFRRRFXPAXARKISIFDFXLATQLSVKLLSRMRACFDRMIVFYNLSIDLIYYMLR
Ga0272425_1000186105	F065269	N/A	MIKSTELKSLSIARYNFXNVRKESLLSQNXAASKKEKDMNAMLNTEEENMNMLLFVYKMIKISINEKLNA
Ga0272425_1000186109	F061402	N/A	MQDDXFAXLFMTEFVDNNAILSSIEQSAFFLNKSFHSHMSFNLNSTEYKITXARIEASKAKNIFEHMK
Ga0272425_1000186115	F091080	N/A	MIILYCFRRVINKNIISFLYFYIIINVYKACIIDFXSKVLLYDQIDFDFNSDIDXISKCLHNSSIKDSLIKVMSVTSVFIRARDLNIFSKLFKMISTMNDLKLNESSDMLMKQNMSILFSVTTLMKIDCFSNLQQSHALKSFQDNYMLYVLTSCIXSKVLS
Ga0272425_1000186117	F086376	N/A	MTRSTESESVSIAHYDFQNVRRESLLSQNRAALEEEKDMNAMSNIKEENMNALLFIYKMIKISINEELNAXIIVNKIDNIFIFIKYMLHQHDIKIKTHNDMIQMLKDVNEINITLKITQTRLQKEMRNKNMIIHHLETASSQQSTSISENHFLKLIKLSDSSLFENSTQNVNN
Ga0272425_1000186123	F098340	GAG	MIKVTVYQTLVKNKKIKIFFLIISEINKALNSVEDFVKLNEVISVMSLSELKKKLSIVYHNFLDVFNREKTMKLSLHXSYDHKIELEDES
Ga0272425_1000186139	F083460	N/A	MQLRMKSSDSQAYSDALLELNASSIKYAMRRXLHELLSHHFNHEESQGNSENDDENEAAEAV
Ga0272425_100018659	F083460	N/A	MQLQMKSSDSQAYSDALLELNTSSIEYAMRCXLHELLNHHLNHEESQDNSKNDDENEAAEAV
Ga0272425_100018668	F061400	N/A	MLFKYYNCIMNLNSEKIIIEAXNIYRREEDEDNAIDESDNSFKTDLQNVLRSINV
Ga0272425_100018672	F055318	N/A	MLRDDEALCVDCVQSFRDHADFDNLNAHATSNLHADEKVK
Ga0272425_100018680	F051591	N/A	MLDALALYLMYRSSRVISLRIVTTNLDLLSCTSRKGKTDSDLIRNAVLLXNNVVLCAIFKCKRVRFRFLRQYTVFCAVLKSIDDLFFSCEFALXFINQITVXIDDSFFCVDELSFRRRFWPSXARKISIFDFXLATQSSVKLLSRMRACFDRTIVLYNLPIDLIYYMLX