Scaffold Ga0272425_1000175

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000175
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 130456
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (22.50%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F009377	Metagenome	318	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F021216	Metagenome	219	Y
F042102	Metagenome	158	Y
F044226	Metagenome	154	Y
F044227	Metagenome	154	Y
F074203	Metagenome	119	Y
F075494	Metagenome	118	Y
F096307	Metagenome	104	Y
F104136	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000175100	F042102	AGAAG	MNASSDTEEENTNVLLFDHKMIKIGISTELNAXISTHEADDIVVFIKYICQQHDIEIKTHNDMIQMLEDVNETNITLKAAQTRLQKENRDKNVIIHYLETASSRQSTLISEDCFLKSIKLLNSSLFENSSQNVDNXLSRMRNKLKANKNHFSIEELKIVYIESXVSEAAIKHIASRMQDIFLNSFLEVKEVLSIINKMYDNLNHHHTTQRQYLKLYQNKIFFHEFXMKFQKFSAELEYNNETLLDDLQHKISSDLQXATLNEXITNLNEFVDICMQVDVRLTELNVRSVVKVSMIQAACSVSSTSTAQLTSSVSSXKKLRRLNLDSIQKELFKKELCFKCKKSKHRAYDCFKMT
Ga0272425_100017511	F074203	N/A	MSSHSFTEERFEEFRNRFSQIFDADSSKSRTKSSSAASFIHEDDESFAETIILLVFYEIXKARSLVLDEETDRLYELDKQQEDEIKELKTKLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQNKLEINVDLFSNERVKLSYIHSRLFNDVAEITQARCERDCVNLYKIVDDFLKELAQLFNDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLNYHEKQLIADLKDKIHSRLXFIXVDQLVQPDSLKEICFYLICLSNVFCQTSESKEVFKQESVEEIHHF
Ga0272425_1000175113	F010214	N/A	MRVSVLFNYDASSLLCFSLMIFYTTMFXFDFQFKDERRFLCIHDAHDCNIRRAVFSYSMIVIHXAEKYVMKERCTRXEDKVXLYXVILFFSXFDLCHVNVEXIVSIDVQSQSFDVXLXSMKENAFXLFSXALNFPRE
Ga0272425_1000175118	F020121	GAG	MRELTDHLCDQMLIAQVIYEFNVNLFRRSCFKYFVEDEVXLNACNLSIAHLVVKLDDHNVEFFKIKRVFEQNSLIIELDLSASIKVHSVFHATLLSHIANDSLSSQRQKSQELIIIENDERFXYVNSILNFKRDRCYNSSLLKYYINXKDHFSTXESFNLLDNCEQALNEFHLVNSVVEESHVISCMMSQCQCQEL
Ga0272425_100017515	F104136	N/A	MIFSIRLAQIFSESXSMNELXIXTNLLTSACMSTFNXXNXMLNQLSRHQQLKSLALLLASXXXSLLRSQSQSLHERNSEYXTLILLERSCLRKNFASNARSQNIKHATVLNQLRCMKLQRIXKMICFRQSNDXKQYTHILFHQHVXXFIXFRVIHCXHHLK
Ga0272425_100017520	F009377	N/A	MTRSTESESMSIAHYELRNARRESLLPHNQVASEEEENTNALLFDYEMIKISINEELNAXIIDKKTDDIVVFIKYMTHQHDIEIETHNDMIQMLKDVNKANIKLKTTQMTLNTIRTRLQKEMKDKNVIIRHLKTALSXQSTLISKDXFSKSIKLSDSFLFEDSR
Ga0272425_100017524	F044226	N/A	MQNDXAKXLFMMKFSENFNIFLIISMTSFYFNKSFHLQMSFNSDTTDYKTIRERFEARKADDIIIQMKELLIFDHQ
Ga0272425_100017530	F096307	AGG	MLYIVVTQIDASLKEDVLKHKKDVDLKDVCDTKKCVCYRNLLIIHNTKKCVCLEDNRSXLEDARKEKDAESYLSQIXVRFRSDFN
Ga0272425_100017531	F010214	N/A	MRVSVLFDYDASSLLCSSLTIFYTMMFRFNSXFEDERRFLCTRDAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVILFFSXFDLCHVDVEXIVSIDMRSQSFDVXLXSMKENAFXLFSXALNFPCE
Ga0272425_100017534	F010214	GAG	MKVSVLFDYDVSSLLCSSLTIFYTTMFRFNSQFKDERCFLCTHDAHDCNICKAVFSYSMIVIHXAEKYVMKERCTXXEDRVXLYXVTLFFFXFDLCHVDVEXIVSINMQSQSFDVXLXSMKENVFXSFSXALDFSCE
Ga0272425_100017538	F044227	N/A	MQLQIKSSNDEACTHALLELIAFAIKNATRCXLLELLNNHHHHEKSQSSNEDDDENEALEAI
Ga0272425_100017543	F075494	N/A	MINDVEKMFVHNVSERKYSVDHVKSMLSDEIYYTXVINEVEKMSVHSINENTSTCSAMHVRSMLLRIMILIMQKMHLNEVHFLRNKISQSEFENLRKHDDEMLIHKNCNITEKQLNSVAETIDCKQLILHAIVKVLIIHETTYNFSSKFIIEFIKIL
Ga0272425_100017554	F003820	N/A	MKLFSYLKYNDCTLMNDFQNKINNRLQNTLSICSKNFTSLTHLRIFLQDVNSKQXVNYQLHSERHTVIIKVTVISDKRVTSLSVTTLIIDYVKSTISSISESVKSSIICYICKILDHLFKNCFQLNKINTSAFYAFISRLHEIIISKNKENEKMSFENNEAKN
Ga0272425_100017559	F010214	N/A	MRVSVLFDYDASSLFCFSLMIFYTTMFRFNSXFKDERRFLCTRDAHDCNVRRAVFSYSMIVIHXAEKYVMKERCTRXEDRVXLYXVTLFFSXFDLYHVDVEXTVSINVQSQSFDVXLXSMKENAFXSFSXALDFPRE
Ga0272425_100017585	F021216	N/A	MSQMKSRMKSNAMRRKHHKLEKALRNHERSNDDHSNDTFNEHTESISSCDIIEELDERER