Scaffold Ga0272425_1000171

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000171
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 131548
• Total Scaffold Genes: 126
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (23.81%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F013598	Metagenome	269	Y
F017767	Metagenome	238	Y
F017941	Metagenome	237	Y
F026450	Metagenome	197	Y
F028667	Metagenome	190	Y
F057012	Metagenome	136	Y
F078020	Metagenome	116	Y
F086377	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100017137	F013598	N/A	MNFIINLFDSCNYNAILTVICKLLKERHYISCIIDDEDITVEKTAEMLIQ
Ga0272425_100017138	F017941	N/A	MKIADLKKNISESIYKQILETNEIDENCTLLREAIARDET
Ga0272425_100017140	F008115	N/A	MNFITELSLSKNYNVICMIICHLFKERHYVSCHXKDDDISIEETVXIMLXNVYRLHDLLSSIVSNRDSQFISIMXQSLCKXLKIKVNLLTVYHSEIDDQLKQANQDVERELQTYCNYMQNDXAKXLSMMKFSDNFNTFLTISMTSFYFNKDFHSXMSFNSDTTDYEMIRQHIKARKIDDIVTQMSELLIFNHQQLKKIKQITEAQMNKHKRNIIYEVDDQVXLIFKNIKITKSCKNLKDKQLDLYSITVKVEIFYRLQLSRSMKHIHSVFSLKCLRSSSNDFLSKQHSELSRSLIIEENEKHXKVDDILNFRRYKERLQYKVKXIEVNHDDEXYYVDKEKFDDLKKVLNEFHKLYFNKLH
Ga0272425_100017143	F078020	N/A	MRFFFDRLISAXKDAVLTLNIKKFFFEAVEADRXSTLRAELIEEFDDHDYFECEALTDIKKTEMRASNXFEKTMTSFCISSSISFLFIQSFSNMTSXXFISAINIETVNFLXLSTVRLSRILXVMIFLVSFSSYSLINFSLASCTSXISSFXHIXSTSFVXIKM
Ga0272425_100017145	F007840	N/A	MIDAIERQNNTRESIESTARLVELLDDLQLIKYASFISINRISDKESSLIARESNRSRESINS
Ga0272425_100017148	F017767	N/A	MKDVLISSMMSMSDDSFASESLTTECVLSSNEISYLLKSLIDIKAADYSFIDKVIAQIVC
Ga0272425_100017173	F086377	N/A	MIQRFXDQRQRILILDCDSVQISIVHAEAKFFFKFLDEENKDDHLKVTDLNEIFAQIFIQITTKF
Ga0272425_100017179	F028667	N/A	MTCNSESVESRTARLLRSIANRQVFLISVDASARSQNVAISXNINMNQQLRQXAIDQSDEIIKMLIELRDQRDMTLKLNEQXIDVQVDHIKRLDELEINQMTINTQEETIVDLREKVLSLKKKQRSANQLRSRQSTKPLLRQSIENHTRRESFTLFDNDHHKFFKFSNSFIFTDEDESTXDSXRIKMNDKLQTNVDHFDNENICIVYVISRLEDDAAEHIFAXHHHDASHFYILIYELFEHLKEIYDDQNKNRKCRRKYNALRQAEKSFNVFYFNFMKLFSYLEYDDRTLMNNLQNKINNRLQNALLICSKDFTTLHHLKSFLQSVNNRQRVNYQLRSKRCMIIIKVIIAPEKRVTSLSAVMTSIIEYVKLTIFSTSESVRSSIVCYICKILNHLSKNCFQNKINTSASXAFTLRLHEIVISKNKENEKMSSFEDSEAKN
Ga0272425_100017180	F057012	N/A	MSDDSFDFKSFTVDIILSSLEKIFRFFALINTEVTDMTFIDESLMSKLCERFDIQLISLSKSKLIRSYDETSDXKLITYALYTSIMIQEHKNEMMLLLITHLDQHKIIIENLWLKRNQMLINSANDXLISLLKIXTLKSVVLKASSQSAFHKSELNKICKMKQKNLNSIVTSMIILKKLMNQKSVNKFIKLTRFIESALIAKQSIQVDLDQLCFFQSTETKKLVNIIMIEVTAYQTLVKNKKIKIFFLIINEIN
Ga0272425_100017191	F026450	N/A	MTSSSIVEHRSSLDLFLLKHSFNSISSFFFIMSCFFKECFEASFFIVEDNDSFAEIITSSMTMKALKKRCEELKARLQAREITSSSSIYSERSRSQKILDSSLFTDEKNSIXKNWYEKVQNKLEINVDLFSSERVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRDYYNLVQEQKKFSKFYTQFQRLFFYLDYQEKQLIVDLKNKINLQLXFAXVTQLIQLNTLKEIRFYLIXLNNDQRAIQEIKNRKAMIKA
Ga0272425_100017192	F007840	N/A	MIDAIERQNNTRKSIESTARLIELLDDLQLIKYASFTSINRISDKESSLIARESNRSRESINFQIKQQKXLHLLLSSIALRSISFF