NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1000155

Scaffold Ga0272425_1000155


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1000155 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)137391
Total Scaffold Genes138 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (14.49%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Associated Families18

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004755Metagenome424Y
F007840Metagenome343Y
F008169Metagenome337Y
F011463Metagenome290Y
F028368Metagenome191Y
F036994Metagenome168Y
F037509Metagenome167Y
F038008Metagenome166Y
F038010Metagenome166N
F055318Metagenome138Y
F057010Metagenome136N
F061402Metagenome131Y
F064254Metagenome128Y
F065268Metagenome127Y
F074203Metagenome119Y
F081945Metagenome113Y
F087978Metagenome109Y
F091080Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_1000155100F038008GAGMYVACNVYNIFLIKQHNLDTFALKQRVYSNDSDSRDDVTAIAMKMNXELDKRLRKLTLVIIHHDELKELVTKAKHFTNVATANQECHEKIYKIYSDSQIFLKTVKVMTSTKDQTRLQRIQTAHENIQSQEVMLKLH
Ga0272425_1000155101F064254N/AMQELYEFISFLFFLSFIXLFNDVTAXNXFSMLIESIIQMIIIAALTISKSFFKFVMFSSCCITFHSTFHLRHVNKMCLIDIQSLSHLHVIIATLSTHLSCRNXLKLIFLVCNCINNTLXDFAXFLCSCKCRCVISDVKYXKXAALNFSFQTILHVCLICFCMSISLVIISVHXCLISDRDNSCTSSIILSAASFSNTSAYSVT
Ga0272425_1000155108F061402N/AMIEFVNNNAISSSIEQLTFFLNKSFHFHMSFNLNSIEYEIIQAKIEADKAENIFEHMK
Ga0272425_1000155119F038010N/AMNNDHLVLSNNLESNKINVNLSVLIDIDIINYAFIDDSFVQRYSLLCFSLSEICILQKFDDQSVVFNSITHYTLVKL
Ga0272425_1000155124F074203N/AMSKCSSIEERFKEFQSHFSQISETDSSKLSSAESFINEDDESFVETVILSVSIENXKTQCMILDRETDQLNELSKQXNNEIKELKTRLQTKEIISSDFIYFKRSRFQKISDFFXFTDKKNFTXKNXYNKIQNKLEINVNLFSNEXIKLSYVHFRLFDDTADVTQSRCKHDCVNLYKIINDLLKELTELFNDSDKKVNFHKEYYNLIQESKKFSEFYTQFQRLFFYLKYHEKQLIIDLKDKINLRLXFIXIDQLVQSDSLKEIHFYLIHLNNDQXIIQEIKNKVNFIKYINDLLKIIFHKTVIT
Ga0272425_100015513F036994AGCAGMXNRMIIEADSLVDLLIEEIDYRLVIEAGSLVAREREVDRFTDR
Ga0272425_1000155135F087978N/AMFSLKLLQSYSEDFLSEQHAKLLKLIIIDDDDDEHXKINDILNFRCYQDQIQYKIKXKDLDKNNEXYYVDKNEFNDFKKVLNEFHMLYSRKSR
Ga0272425_100015518F037509N/AMILISILIQIHSTDNETSIKKFVYLMIDDIERQNNIKKSIKLMKTYNHVIARESIAQLIASVQIN
Ga0272425_10001553F004755GAGLNYIHSRLFNDAAEIIQARCKRDYVNLYRIVEDLLKELAQLFNDSNKKVNFHRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIVDLKDKINSRLXFIXVNQLVQSDSLKEIRFYLIHLNNDQXVIXKIKNKLKHVNDVSKTIFHRAIVITQSVNHSKSDQLKSHDAILTNVKEADILFESCFICHKSNHSFKKYLDQSTKINAVNKEYDCFDFNSNFDSKN
Ga0272425_100015530F008169N/AMQSSLDQENQLILMKQTSENKLFNLIKRIDDKESSXIAXESLKNSQIKNTLLINNILFXRLNTXSYIFINTVEHHHSLDLVLSSNFIMSKRSFIKKRFKEFQNHFFQISETDSSKLSSAESFINEDDKSFAETVILSVSIENXKTXCMILDRETNRLNELSKQXDNEIKELKTRLQTKEITSSDFIYSERFRSQKIPDSFXFTDEKNFTXENXYNKIQNKLKINVNLFSNEXVKLSYVHFRLFDDAADVAQSRREYDCVNFYKIVNDLLKELAELFNDSDKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLKYHEKQLIIDLKDKINSHLRFIXIDQLVQPDSLKEIHFYLIHLNNDQRVIQEIKNKVNLIKHVNDLSKIIFNRAVVTQSVDHSKSDHLKLHDAILTSIKEADVLVETCFIYHKSDHSSKECFDRFTRINAMNNEYNRFEFNFNSNFDSKN
Ga0272425_100015533F011463N/AMKELLSFNHQQLKKMKLIIEVRVNKHKXNIIYEVNDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKAKIFYHLHLSVSMKHLHLMFSLKLLQSYSEDSLSEQHAELFRFIIIDDDNNEHXKINDILNFRRYRDRIQYKIKXKDLDRDNEXYYVDKDEFNDFEKVLNEFHVLYSRKSR
Ga0272425_10001558F007840N/AMIDAIERQNNTRESIESTARLIELLDDLQLIKYASFTSINRISDKESSLIARESNQSRESINSQIKQQKRLHLLLSSIVLRSISFF
Ga0272425_100015580F081945N/AMFNHSFIEEHSEEFQNHFFQIFDTDSLKSSMKSLSAASFIHEDDELFAETIIFLVFYEIXKT
Ga0272425_100015582F028368N/ALCKLNEILLKENYFEKSFLIDVHLIFQNXSFSLHFLIDNDSVVYTIIHFNLVNKVCKKLRIQFILLIKEKLIRNYDEKIFKKIITHKILLNLIIESHKKLTVSMLIVDINHHEIILSKLXMNKNEILLNMQNDVIVFSNQLNTSILIFLISLNSKHSSXSXSSSLSSIIQTKIFMMLKXLVQEKLFLIXSINAASFKTLLNHSKKNKIKVFALFMININRKMLRVCRDXIKFSNQ
Ga0272425_100015584F036994N/AMXDRMIIEADSLVDLLIEEIDYRLALEADSLVACECEIDRFTDR
Ga0272425_100015589F091080N/AMIILCXSRXVINKNIISFLCSCIMINVYRACVIDFXSEISSYNQIDFDFDNNIDXISKCSHSFDIKDSSMKIMSMTSIFIKAKNLNIFSKLFKMMLTMNDLKLNELSDMLMKQNMSILLSIITLTKADCFSNSQRFHALKSSQDNHMLYILTFCIXSKVLS
Ga0272425_10001559F057010N/AMSRLFKERFEASFFIVEDNDSFVEIITSSMTMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSIXENWYEKVQNKLEINVDLFSSEXVKLSYVHFRLFNDAAEITQSKRERDCFNSYKIVDELLKELAQLFNDSDKEVNFRRNYYNLIQEQKKFSEFYTQFQQLFFYLDYQEKQLIVDLKNKINSRLQFAXVTQFIQLSTLKEIYFYLIQLNNDQRAIXEIKNKEAMIKAQTTKQIIYAEESVKATRRIIETKMIDQSKSRDAVLTSIKENDLLIENCFLCHKSDHTSKECLNRSFRINLLDDEFDHSSNFNSESDSKN
Ga0272425_100015593F065268N/AVSIACYDFQNVRRESLLSQNQTASEKEDMNVLSDTEEKNMNVLLFNHEMIKISINTELNAXISIHEADDIIVFIKYIC
Ga0272425_100015595F055318N/ALNDIKTLRDDEALCVDRVQSFRDRADFDNLNAHVTSNLHADEKVK
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