Scaffold Ga0272425_1000144

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000144
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142118
• Total Scaffold Genes: 143
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (55.94%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041516	Metagenome	159	Y
F048019	Metagenome	148	Y
F055318	Metagenome	138	Y
F058565	Metagenome	134	Y
F096306	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_100014410	F041516	N/A	MIQKVIHIHEAYNLSLKDHEIIHEKENLSNIEKTLHMLKESILVEDFNLHHFT
Ga0272425_100014415	F058565	AGAAG	MNCTNCSNADSKMIASNVDLSQDNKDVRSKCLHNDEKNVANIIDLLIKISTLEKEKSKDH
Ga0272425_100014423	F048019	N/A	MNEHAFELFIAEDFAKALQDESTVYSFIMINVIEESIVEHQVKVMNNMMSHITNALETQTLFVKLKEYEDVFSTESINKLLLHEDHDHAIKITAKSSYESLYNLLNTELATLRQYLNDVLAKE
Ga0272425_100014427	F055318	N/A	MLLDDEVLHINYVQSFYDLANFNNLNAHAISNLYADEKVK
Ga0272425_10001445	F096306	N/A	MFAMYDNRAVNSLIVDDDFNKERSCRDNSELHALMILFDIAILIATNVKIIFVEPNDK