Scaffold Ga0272425_1000143

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000143
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142365
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (22.37%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003820	Metagenome	466	Y
F005901	Metagenome	386	Y
F007840	Metagenome	343	Y
F008115	Metagenome	338	Y
F013598	Metagenome	269	Y
F019584	Metagenome	228	Y
F021452	Metagenome	218	Y
F037509	Metagenome	167	Y
F065268	Metagenome	127	Y
F076668	Metagenome	117	Y
F078020	Metagenome	116	Y
F086375	Metagenome	110	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_1000143107	F005901	N/A	MNDKLHANVDHFDNENICITYVISRLEDDAAEHIFAXRRHDASHSYISIYELFEHLKEIYDDQNKNRKCRRKYNALRQAEKSFNVFYFDFMKLFSYLEYDDCTLMNNLQNKINNRLQNALSICSKDFTTLHRLKSFLQSVNNKQRVNYQLRSERCMIIVKVIIASEKRVTLLSAVMTSIIKYVKSTIFSTSESVRSSIVCYICKILNHLSKNCSQNKINTSASQAFIFRLHEIVISKNKENEKMSSFEDSEAKN
Ga0272425_1000143110	F003820	N/A	MTRSRSISNSLDYDDCILMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQNVNNKQXVNYQLCSKRCTVIVKVTVVSDKCAATSLSVTTLIINYIKFIIFFTSESARSSIIYYTCKISSHLSKNCSQNKINTFASYAFTFHLHEIIISKNKKNEKMSSFKNSKTKN
Ga0272425_1000143114	F013598	N/A	MNFIINLSDSSKYNAILTIICRLLKERHYISCIIDDEDITVEKTAEMLTQ
Ga0272425_1000143118	F076668	N/A	MLKSLMHLTDHYVIKETSVFKSITTTKKIMHMNNALSTDILMLCNRKDATNQTLLRCAKFKNIRRLQKISFSKXFSKDXLKRLCMIMLKQTCYNIIFAFSALSXVLFKKSLKTLRFSLXKVSALLFCIITFVVEFSLTFCSMQTSTXXQFMSNASSFKIEIXDLXRILXXILMSCFSRQTRKCLSSSVR
Ga0272425_100014313	F021452	N/A	MSDDSFDFKSFTVDIILSSLEKIFRSLALINTEVTDMTFINESLMSKLCEHFDIQLISLXKSKSIXSYDEIFDQKSITYTLYTSIMIQEHKNEMMSLLITVTSVSRLNRASQCL
Ga0272425_1000143131	F078020	N/A	MRFFFDHLINAXKDAALTLNIEKFFFEAVEADRXSTLRAELIEEFDDHDYFECEALTDIEKTEMRASNXFEKTMTSFRIFSSISFLFIQSFSNMTSXXFISAINIETVNFLXLSTVRLGRILXVMIFLVSFSSYSLINFSLASRMSXISSFXHIXSTSFVXIKM
Ga0272425_1000143132	F019584	N/A	MIKAQTTKQIIYAEKSVKATRRIIEMKITDQSKPRDTVLTNVKENDLLIENCFLCHKSDHTSKECLNRSFRINALDDKFDHSLNFDSESDSKN
Ga0272425_1000143134	F007840	N/A	MIDAIERQNNTRESIESTARLVELLDDLQLIKYASFISINRISDKESSLIARESNRSRESTNSQTKQQKRLHLLLSSIALRSISFF
Ga0272425_1000143144	F086375	N/A	MFILFVNSKSITSXNRGENXFNEIKKHYKXQNNDHVIIFKQLHKLKQFNIXQEVNEINKAVMKDNVRDEIKQEQKNKDIHDNASQ
Ga0272425_100014316	F065268	N/A	MIKSTELESESMSIAHYELQNVERKSLLSQNQTASEEEDMNASLNTEEENMNMLFFNHEMIKISISIELNAXISAYEADDLIVFIKYICQQHDIEIKIHNDMI
Ga0272425_10001437	F098340	N/A	MIEVAAYQTLVKNKKIKIFFLIISEINKALSSVEDFAKLNEMISVMSLDELKKKLSLVYHDFLNVFDREKTTQLLLH
Ga0272425_10001438	F008115	N/A	MNFITELSLSEDYNVICIIICCLIKEHHYVFCHXKDDDISVEETVXIMLXNVYXLHDILSSIVSNKDFQFILTMXKSLCKRLRITASLFTVYHSKIDDQTKRVNQDVERELRIYCNYMQNDXVKXIFMMKFSDNFNIFLIISMISFYFNKEFHFRMSFDSDTTDYETTHERLEARKADDIVIXMKELLSFDHQQLKKMKLIIKVQINKHRXNVIYKVNDXVXLSFRNVKTTRLCKDLKDKQLESYQITVKARVFYHLHLSVSMKHLHSMFSSKLLXLYLENLLSKQHAKLLRLIIIDDDDDEHXKIDDILNFRCYXGXI
Ga0272425_100014394	F003820	N/A	MKLFSYLDYDDCTLMNNFQNKINNRLQNALSICFKDFTSLHCLKIFLQDVNNKQRVNYQLHSQLCTVTVKVTVVPDKCIATSLSMTTSIINYIKSTLSSIFESARSFIICYTCKISSHLFKNCSQNKINTSASYAFTSHLHEIVISKNKKNEKMSSFEDSEAKN
Ga0272425_100014397	F037509	N/A	MILISLFIQIHLIDNEMSIKKFVYLMINDIKRQNNIKKSIKSTKTYDHVIARESIAQSVASVQID