Scaffold Ga0272425_1000142

Overview

Basic Information

• Taxon OID: 3300031453
• Scaffold ID: Ga0272425_1000142
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 142642
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (31.16%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.8
  • Long. (^o): 159.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005901	Metagenome	386	Y
F011463	Metagenome	290	Y
F037509	Metagenome	167	Y
F040408	Metagenome	161	Y
F070712	Metagenome	122	Y
F074203	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272425_10001421	F074203	N/A	MLSHSLTEERFEEFRNRFSQIPDADSSKPRTKSSSAASFIHKDDESFAETIILLVFYEIXKARSLALDEETDRLYELDKQQEDEIKELKTRLQAKENTSSDFTYSERSRSQKIPDSSLFTDEKNSTXKNXYGKIQDKLEINVDLFSNERVKLSYIHSRLFDDAAEITQARRERDCVNLYKIVDDLLKELAQLFDDLNKKVNFRRKYYNLVQEFKKFSEFYTQFQRLSFYLDYHEKQLI
Ga0272425_100014215	F070712	N/A	MNDIKEKKFLVKVRKQVIFAERXDSLNLYRKIEVTTFVNHSKLCNVILTNVKNIDLQAETCFICHKSDHTSRECFDXSRVNALENDEFDQFTSNSEFDFNSKN
Ga0272425_100014221	F037509	N/A	MILISLLIQIHSTDNETSIKKFVYLMINNIERQNNIKKSIESMRTYDHXIARESIAQSVASVQIN
Ga0272425_100014223	F040408	AGAAG	MLFKSIFDIYIKNDAMKKEVSAAKKHIEMLQDVQNTLT
Ga0272425_100014253	F005901	GAG	MNDKLQTNVDHFNNENICIVYVISRLEDDVAEHIFVXYHHDALHSYISIYELFEHLKEIYDELNRNQKCHHEYNVLRQTDKLFNVFYFNFMKLFSYLDYDNRTLMNDLQNKINNRLQNALSVCFKDFTSLHHLKIFLQDVNNKQRVNYQLRSQLRTVTVKVTVVPDKCIATSLSVMTSIINYVKFILSSISESARSSIICYTCKISSHLFKNCSQNKINTSASHAFIFRLHEIIISKNKKNEKMSSFEDNEAKN
Ga0272425_10001429	F011463	N/A	MKQITEDQINKHRRNVIYEINDXVXLSFRNVKTTRSCKDLKDKQLELYQIMIKVEIFYHLRLSVSIKQLHSVFSSKLLHSYFNDLLSEQHSESLRSLIIKNDEHXEINDILNFRCYRDXIQYKIKXTELNRDNEXYYVDKEEFKSLKEVLVEFHKLYSDKSH